Job Description P39382 Confidence 99.79% Date Thu Jan 5 12:00:14 GMT 2012 Rank 16 Aligned Residues 205 % Identity 12% Template c3s8vA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-dkk1 complex Resolution 3.10 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	.	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		P	L	T	G	V	K	E	A	S	A	L	D	F	D	V	T	D	N	R	I	Y	W	T	D	I	S	L	K	T	I	S	R	A	F	M	N	G	S	A	L	E	H	V	V	E	F	G	L	D	Y	P	E	G	M	A	V	D	W	L	G	K	N	L	Y	W	A	D	T	G	T	N	R	I	E	V	S	K	L	D	G
Template Known Secondary structure				S	S		S	S								T	T	T	T							T	T	T	T							T	T	S		S							S	S		S									T	T	T	T							T	T	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		Q	H	R	Q	V	L	V	W	K	.	.	.	.	.	.	.	.	.	D	L	D	S	P	R	A	L	A	L	D	P	A	E	G	F	M	Y	W	T	E	W	G	G	K	P	K	I	D	R	A	.	.	.	.	.	.	.	.	.	A	M	D	G	S	E	R	T	T	L	V	P	N	V	G	R	A	N	G	L	T	I
Template Known Secondary structure			S							T	.	.	.	.	.	.	.	.	.	T											T	T	T	T								S	S	S							.	.	.	.	.	.	.	.	.		T	T	S		S							S		S		B
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		737	.	.	740	.	.	.	.	.										.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.										.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T	P	Q	S
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	A	K	R	R	L	Y	W	T	D	L	D	T	N	L	I	E	S	S	N	M	L	G	L	N	R	E	V	I	A	D	D	.	.	.	.	.	.	.	.	.	L	P	H	P	F	G	L	T	Q	Y	Q	D	Y	I	Y	W	T	D	W	S	R	R	S	I	E	R	A	N	K	T	S
Template Known Secondary structure			T	T	T	T							T	T	T	T							T	T	S		S								.	.	.	.	.	.	.	.	.		S	S								S	S							T	T	T	T							T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		799	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.										.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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