Job Description P39382 Confidence 91.24% Date Thu Jan 5 12:00:14 GMT 2012 Rank 178 Aligned Residues 168 % Identity 10% Template c3pbpD_ PDB info PDB header:transport protein,structural protein Chain: D: PDB Molecule:nucleoporin nup82; PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex Resolution 2.60 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																																								.	.
Query SS confidence																																							.	.																																								.	.
Query Sequence		L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	.	.	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	.	.
Query Conservation																																							.	.																																								.	.
Alig confidence																																							.	.																				.																				.	.
Template Conservation																																																												.
Template Sequence		I	F	S	S	Q	N	G	T	R	I	V	F	I	Q	D	N	I	I	R	W	Y	N	V	L	T	D	S	L	Y	H	S	L	N	F	S	R	H	L	V	L	D	D	T	F	H	V	I	S	S	T	S	G	D	L	L	C	L	F	.	N	D	N	E	I	F	V	X	E	V	P	W	G	Y	S	N	V	E	D	V	S
Template Known Secondary structure						T	T	T	T							T	T							T	T	T		S	S							T	T	T					T	T							T	T	S	S						.		S	S									T	T		S
Template Predicted Secondary structure																																																												.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
							139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.																								.	.	.
Query SS confidence		.	.	.	.	.																								.	.	.
Query Sequence		.	.	.	.	.	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	.	.	.	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E
Query Conservation		.	.	.	.	.																								.	.	.
Alig confidence		.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		I	Q	D	A	F	Q	I	F	H	Y	S	I	D	E	E	E	P	K	S	S	I	K	K	V	L	F	H	P	K	S	Y	R	D	S	C	I	V	V	L	K	E	D	D	T	I	T	X	F	D	I	L	N	S	Q	E	K	P	I	V	L	N	K	P	N	N	S	F	G	L	D	A	R	V	N	D	I	T	D	L	E
Template Known Secondary structure					T	T							G	G	G														T	T	B	G	G	G								T	T	S							T	T		T	T	S						S							S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		F	N	Q	Q	K	N	T	L	L	V	L	.	S	H	E	S	R	A	L	Q	E	V
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		F	S	K	D	G	L	T	L	Y	C	L	N	T	T	E	G	G	D	I	F	A	F
Template Known Secondary structure				T	T	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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