Job Description P39382 Confidence 97.94% Date Thu Jan 5 12:00:14 GMT 2012 Rank 139 Aligned Residues 223 % Identity 13% Template c3odtB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 Resolution 1.35 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T
Query Conservation
Alig confidence																		.																													.
Template Conservation																		.																													.
Template Sequence		A	T	L	K	G	H	D	Q	D	V	R	D	V	V	A	V	.	D	D	S	K	V	A	S	V	S	R	D	G	T	V	R	L	W	S	K	D	D	Q	W	L	G	T	V	V	.	Y	T	G	Q	G	F	L	N	S	V	C	Y	D	S	E	K	E	L	L	L	F	G	G	K	D	T	X	I	N	G	V	P	L	F
Template Known Secondary structure								S	S									.		T	T							T	T	S								S	S	S							.				S	S									T	T	T	T							T	T	S							T	T
Template Predicted Secondary structure																		.																													.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																																			131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	S	G	E	D	P	L	Y	T	L	I	G	H	Q	G	N	V	C	S	L	S	F	Q	D	G	V	V	I	S	G	S	W	D	K	T	A	K	V	W	K	E	G	S	L	V	Y	N	L	Q	A	H	N	A	S	V	W	D	A	K	V	V	S	F	S	E	N	K	F	L	T	A	S	A	D	K	T	I	K	L
Template Known Secondary structure				T	T	S			S							S	S									T	T							T	T	S							T	T										S	S										T	T	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.																														.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	K	V	N	G	L	L	S	S	N	E	L	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																																																						.
Template Sequence		W	Q	N	D	K	V	I	K	T	F	S	G	I	H	N	D	V	V	R	H	L	A	V	V	D	D	G	H	F	I	S	C	S	N	D	G	L	I	K	L	V	D	X	H	T	G	D	V	L	R	T	Y	E	G	H	E	S	F	V	Y	C	I	K	L	L	P	N	G	.	D	I	V	S	C	G	E	D	R	T	V
Template Known Secondary structure				T	T								S	S		S	S										T	T							T	T	S							T	T	T											S	S									T	T	S	.							T	T	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.
		229	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Q	E	V	T	L	V	.	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation								.
Alig confidence								.														.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		R	I	W	S	K	E	N	G	S	L	K	Q	V	I	T	L	P	A	I	S	.	.	.	.	.	.	.	.	.	I	W	S	V	D	C	X	S	N	G	D	I	I	V	G	S	S	D	N	L	V	R	I	F	S	Q	E	K	S
Template Known Secondary structure						T	T	T		S								S	S	S		.	.	.	.	.	.	.	.	.								T	T	S							T	T	S							S		G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.										.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions