Job Description P39382 Confidence 98.42% Date Thu Jan 5 12:00:14 GMT 2012 Rank 118 Aligned Residues 217 % Identity 11% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																						.	.	.																							.
Query SS confidence																						.	.	.																							.
Query Sequence		D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	.	.	.	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	.	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I
Query Conservation																						.	.	.																							.
Alig confidence																						.	.	.																							.
Template Conservation
Template Sequence		D	I	E	V	T	S	S	P	D	D	S	I	G	C	L	S	F	S	P	P	T	L	P	G	N	F	L	I	A	G	S	W	A	N	D	V	R	C	W	E	V	Q	D	S	G	Q	T	I	P	K	A	Q	Q	M	H	T	G	P	V	L	D	V	C	W	S	D	D	G	S	K	V	F	T	A	S	C	D	K	T	A
Template Known Secondary structure						S	S			S	S										T	T	S	S	S								T	T	S									T	T	S											S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	W	D	L	S	S	N	Q	A	I	Q	I	A	Q	H	D	A	P	V	K	T	I	H	W	I	K	A	P	N	Y	S	C	V	M	T	G	S	W	D	K	T	L	K	F	W	D	T	R	S	S	N	P	M	M	V	L	Q	L	P	E	R	C	Y	C	A	D	V	I	Y	P	M	A	V	V	A	T	A	E	R
Template Known Secondary structure						T	T	T	T									S	S											S	S									T	T	S							S	S		S	S		S						S	S									T	T							G	G	G
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
																																										165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	I	V	Y	Q	L	E	N	Q	P	S	E	F	R	R	I	E	S	P	L	K	H	Q	H	R	C	V	A	I	F	K	D	K	Q	N	K	P	T	G	F	A	L	G	S	I	E	G	R	V	A	I	H	Y	I	N	P	P	N	P	A	K	D	N	F	T	F	K	C	H	R	S	N	S	A	P	Q	D	I	Y
Template Known Secondary structure									S	S	S										S		S	S											T	T	S										S	S	S							S	S		S						S						S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	.	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N
Query Conservation																																.
Alig confidence												.																				.														.	.	.	.	.	.	.	.	.
Template Conservation												.																																		.	.	.	.	.	.	.	.	.
Template Sequence		A	V	N	G	I	A	F	H	P	V	.	H	G	T	L	A	T	V	G	S	D	G	R	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q	P	.	.	.	.	.	.	.	.	.	I	S	A	C	C	F	N	H	N	G	N	I	F	A	Y	A	S	S	Y
Template Known Secondary structure										T	T	.	T								T	T	S							T	T	T	T										S	S		.	.	.	.	.	.	.	.	.								T	T	S	S
Template Predicted Secondary structure												.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.										.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions