Job Description P39382 Confidence 99.57% Date Thu Jan 5 12:00:14 GMT 2012 Rank 44 Aligned Residues 218 % Identity 11% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		K	K	T	F	S	N	R	S	D	R	V	K	G	I	D	F	H	P	T	E	P	W	V	L	T	T	L	Y	S	G	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	.	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	I	V	G	S	D	D	F	R	I	R	V	F	N	Y
Template Known Secondary structure										S									S	S	S	S							T	T	S							T	T	T	T								.			S	S									G	G	G	T							T	T	S							T
Template Predicted Secondary structure																																																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template Sequence		N	T	G	E	K	V	V	D	F	E	A	.	.	.	.	.	.	.	.	.	H	P	D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	S	G	S	D	D	L	T	V	K	L	W	N	W	E	N	N	W	A	L	E	Q	T	F	E	G	H	E	H	.	.	.	.	.	.	.	.	.	F	V	M	C	V
Template Known Secondary structure		T	T										.	.	.	.	.	.	.	.	.		S	S									S	S	S	S							T	T	S							G	G	G	T	S										S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.										.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	N	P	K	D	P	S	T	F	A	S	G	C	L	D	R	T	V	K	V	W	S	L	G	Q	S	T	P	N	F	T	L	T	T	G	Q	E	R	G	V	N	Y	V	D	Y	Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I	W	D	Y	Q	T	K	S	C	V	A	T	L	E	G
Template Known Secondary structure					T	T										T	T	S							T	T		S	S		S								T	T										S	T	T									T	T	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
								259	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.										.
Query SS confidence		.	.	.	.	.	.										.
Query Sequence		.	.	.	.	.	.	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T	P	Q	S	S	H
Query Conservation		.	.	.	.	.	.										.
Alig confidence		.	.	.	.	.	.										.
Template Conservation
Template Sequence		H	M	S	N	V	S	F	A	V	F	H	P	T	L	P	I	I	I	S	G	S	E	D	G	T	L	K	I	W	N	S	S	T	Y	K
Template Known Secondary structure			S	S									S	S	S	S							T	T	S							T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions