Job Description P39382 Confidence 99.41% Date Thu Jan 5 12:00:14 GMT 2012 Rank 61 Aligned Residues 211 % Identity 9% Template c3lrvA_ PDB info PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	I	E	V	D	S	A	N	E	I	I	Y	M	Y	G	H	N	T	E	Y	F	I	W	A	D	N	R	G	T	I	G	F	Q	S	Y	E	D	D	S	Q	Y	I	V	H	S	A	K	S	D	V	E	Y	S	S	G	V	L	H	K	D	S	L	L	L	A	L	Y	S	P	D	G	I	L	D	V	Y	N	L	S
Template Known Secondary structure									S	S																		T	T								S	S	S	S										S	S										T	T	S								T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.																										.																								.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																										.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	D	Q	A	S	S	R	.	.	.	.	.	.	.	F	P	V	D	E	E	A	K	I	K	E	V	K	F	A	D	N	G	Y	W	M	V	V	E	C	.	D	Q	T	V	V	C	F	D	L	R	K	D	V	G	T	L	A	Y	P	T	Y	T	I	.	.	.	.	.	.	.	.	.	.	G	T	V	T	Y	D
Template Known Secondary structure			T	T	S					.	.	.	.	.	.	.					T	T	S									T	T	S	S							.	S	S	B						T	T	S	S	T	T		B	S	S				B		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.																										.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.								.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.											.	.	.	420	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	.	.	.	R	F	Y	R	F	T	P
Query Conservation																																																																			.	.	.
Alig confidence																																										.	.	.																							.	.	.
Template Conservation																																										.	.	.
Template Sequence		I	D	D	S	G	K	N	M	I	A	Y	S	N	E	S	N	S	L	T	I	Y	K	F	D	K	K	T	K	N	W	T	K	D	E	E	S	A	L	C	L	.	.	.	A	D	F	T	D	M	D	V	V	C	G	D	G	G	I	A	A	I	L	K	T	N	D	S	F	N	I	V	A	L	T	P
Template Known Secondary structure				T	T	S	S							T	T	T	T									T	T	T		S												.	.	.												T	T									S	S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.				.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions