Job Description P39382 Confidence 98.21% Date Thu Jan 5 12:00:14 GMT 2012 Rank 128 Aligned Residues 225 % Identity 9% Template c3jrpA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade Resolution 2.60 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.													.	.
Query SS confidence																																																	.													.	.
Query Sequence		I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	.	V	K	D	L	E	T	I	E	Y	I	G	D	.	.	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L
Query Conservation																																																	.													.	.
Alig confidence																																																	.													.	.
Template Conservation
Template Sequence		A	N	A	H	N	E	L	I	H	D	A	V	L	D	Y	Y	G	K	R	L	A	T	C	S	S	D	K	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y	D	G	K	V	L	I	W	K	E
Template Known Secondary structure																S	S	S	S							T	T	S									T	T												S	S										G	G	G		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																																																										.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		E	N	G	R	W	S	Q	I	A	V	H	.	.	.	.	.	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P	A	T	K	E
Template Known Secondary structure			T	T									.	.	.	.	.				S	S										G	G	G		S							T	T	S									T	T	S											T	T													T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
																																						203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	K	F	V	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	W	T	Q	D	N	E	Q	G	P	W	K	K	T	L	L	K
Template Known Secondary structure		T								T	T	S									T	T	T	T												S	S												S	S	S								T	T	S								S	S	T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation																							.
Alig confidence					.	.	.																.
Template Conservation					.	.	.
Template Sequence		E	E	K	.	.	.	F	P	D	V	L	W	R	A	S	W	S	L	S	G	N	V	L	A	L	S	G	G	D	N	K	V	T	L	W	K	E	N	L	E
Template Known Secondary structure		S	S		.	.	.		S	S									S	S	S								S	S	S	S									T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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