Job Description P39382 Confidence 99.32% Date Thu Jan 5 12:00:14 GMT 2012 Rank 66 Aligned Residues 214 % Identity 13% Template c3jroA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Resolution 4.00 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																		.	.																																						.									.	.
Query SS confidence																		.	.																																						.									.	.
Query Sequence		K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	.	.	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	.	E	T	I	E	Y	I	G	D	.	.	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y
Query Conservation																		.	.																																						.									.	.
Alig confidence																		.	.																																						.									.	.
Template Conservation
Template Sequence		D	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y	D	G	K	V	L	I	W	K	E	E	N	G	R	W	S	Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S
Template Known Secondary structure								S	S										T	T	S		S							T	T	S									T	T												S	S										G	G	G		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	.	.	.	.	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F
Query Conservation																																						.	.	.	.
Alig confidence															.	.	.	.	.	.	.																	.	.	.	.																																			.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																																																							.	.	.	.	.	.
Template Sequence		V	V	E	F	K	E	N	G	T	T	S	P	I	.	.	.	.	.	.	.	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P	A	T	T	K	E	S	R	K	F	V	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	.	.	.	.	.	.
Template Known Secondary structure							S	S	S						.	.	.	.	.	.	.						S	S													G	G	G								T	T	S									T	T	T	T											.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.																																																							.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	.	.	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	R	F	Y	R
Query Conservation																.	.
Alig confidence																.	.																																										.	.	.
Template Conservation																																																											.	.	.
Template Sequence		H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	W	T	Q	D	N	E	Q	G	P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	.	.	.	A	S	W	S	L	S	G	N	V	L	A	L	S	G	G	D	N	K	V	T
Template Known Secondary structure			S	S												S	S	S								S	S	S								S	S	S	S	S			B			B	S	S	S	S			S	S					.	.	.					T	T	T								S	S	S
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		280
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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