Phyre 2 alignment of P39382 with c3iz6a

Job Description P39382
Confidence 98.75% Date Thu Jan 5 12:00:14 GMT 2012

Rank 102 Aligned Residues 228

% Identity 16% Template c3iz6a_

PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Resolution 5.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence	R	T	L	Q	G	H	S	G	K	V	Y	S	L	D	W	T	P	E	K	N	W	I	V	S	A	S	Q	D	G	R	L	I	V	W	N	A	L	T	S	Q	K	T	H	A	I	K	.	L	H	C	P	W	V	M	E	C	A	F	A	P	N	G	Q	S	V	A	C	G	G	L	D	S	A	C	S	I	F	N	L	S
Template Known Secondary structure							S	S									T	T	S	S							T	T	S							T	T	T	T								.				T	T								T	T	S	S							S	S	S
Template Predicted Secondary structure																																															.
Template SS confidence
	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

																																																131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	Q	A	D	R	D	G	N	M	P	V	S	R	V	L	T	G	H	K	G	Y	A	S	S	C	Q	Y	V	P	D	Q	E	T	R	L	I	T	G	S	G	D	Q	T	C	V	L	W	D	V	T	T	G	Q	R	I	S	I	F	G	S	E	F	P	S	G	H	T	A	D	V	L	S	L	S	I	N	S	L	N	A
Template Known Secondary structure			S	S				S	S	T	T			B					S	S						B			S	S	S	S	S							T	T	S							T	T	T											S	S	S	S			S									S	S	S
Template Predicted Secondary structure
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																																									.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	Q	R	Q	F	T	L
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	M	F	I	S	G	S	C	D	T	T	V	R	L	W	D	L	R	I	T	S	R	A	V	R	T	Y	H	G	H	E	G	D	I	N	S	V	K	F	F	P	D	G	Q	R	F	G	T	G	S	D	D	G	T	C	R	L	F	D	M	R	T	G	H	Q	L	Q	V	Y	N	R	E	P	D	R	N	D	N	E	L
Template Known Secondary structure								T	T	S							T	T	T	T											S	S									T	T	S	S							S	S	S							T	T	T	T											S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																.																																		.
Query SS confidence																																.																																		.
Query Sequence	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	.	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T
Query Conservation																																.																																		.
Alig confidence												.																				.																.	.	.	.	.														.
Template Conservation												.																																				.	.	.	.	.
Template Sequence	P	I	V	T	S	V	A	F	S	I	S	.	G	R	L	L	F	A	G	Y	S	N	G	D	C	Y	V	W	D	T	L	L	A	E	M	V	L	N	L	G	T	L	Q	N	S	H	E	.	.	.	.	.	G	R	I	S	C	L	G	L	S	S	D	G	S	A	L	C	T	G	S	W	D	K	N	L	K	I	W	A
Template Known Secondary structure		S		S						S	S	.	S	S							T	T	S							T	T	T										S		S	S			.	.	.	.	.										S	S	S	S							T	T	S
Template Predicted Secondary structure												.																																				.	.	.	.	.
Template SS confidence
	299	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.						.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

	282	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	Q	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	S	G	H
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
	373	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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