Job Description P39382 Confidence 99.40% Date Thu Jan 5 12:00:14 GMT 2012 Rank 63 Aligned Residues 201 % Identity 13% Template c3iytG_ PDB info PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex Resolution 9.50 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		L	E	W	I	N	K	K	A	V	Y	H	A	C	F	S	E	D	G	Q	R	I	A	S	C	G	A	D	K	T	L	Q	V	F	K	A	E	T	G	E	K	L	L	E	I	K	.	A	H	E	D	E	V	L	C	C	A	F	S	T	D	D	R	F	I	A	T	C	S	V	D	K	K	V	K	I	W	N	S	M	T
Template Known Secondary structure																	S	S	S	S							T	T	S							T	T	T									.			S	S									S	S	S	S							T	T								T	T	S
Template Predicted Secondary structure																																															.
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	.	.	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A
Query Conservation																																			.	.
Alig confidence							.	.	.	.	.	.	.	.	.																				.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	L	V	H	.	.	.	.	.	.	.	.	.	T	Y	D	E	H	S	E	Q	V	N	C	C	H	F	T	N	S	S	H	H	L	L	L	A	T	G	S	S	D	C	F	L	K	L	W	D	L	N	Q	K	E	C	R	N	T	M	F	G	H	T	N	.	.	.	.	.	.	.	.	.	.	S	V	N	H	C
Template Known Secondary structure		S					.	.	.	.	.	.	.	.	.						S	S									S	S	S	S	S	S							T	T	S							T	T	T											S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		689	690	.	.	.										.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.											.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation																																																												.
Alig confidence							.																											.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation							.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	S	P	D	.	D	K	L	L	A	S	C	S	A	D	G	T	L	K	L	W	D	A	T	S	A	N	E	R	K	S	.	.	.	.	.	.	.	.	.	.	.	.	I	N	V	K	Q	F	F	L	N	L	E	D	P	Q	E	R	I	M	V	A	A	K	N	K	I	F	L	F	D	I	H	T	S
Template Known Secondary structure					S	S	.	S								T	T	S							S	S	S							.	.	.	.	.	.	.	.	.	.	.	.					S	S																S	S							S	S	S	T
Template Predicted Secondary structure							.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		750	.	.	.	.		.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780													.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions