Job Description P39382 Confidence 98.61% Date Thu Jan 5 12:00:14 GMT 2012 Rank 111 Aligned Residues 240 % Identity 11% Template c3greA_ PDB info PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain Resolution 1.80 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.
Predicted Secondary structure																																												.																													.	.	.	.
Query SS confidence																																												.																													.	.	.	.
Query Sequence		Q	S	C	A	R	K	S	N	H	A	A	S	F	Q	N	Y	H	A	T	I	D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	.	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	.	.	.	.	F	V	K	D	L
Query Conservation																																												.																													.	.	.	.
Alig confidence																																												.																													.	.	.	.
Template Conservation
Template Sequence		F	G	P	I	Q	E	I	V	R	S	P	N	M	G	N	L	R	G	K	L	I	A	T	L	M	E	N	E	P	N	S	I	T	S	S	A	V	S	P	G	E	T	P	Y	L	I	T	G	S	D	Q	G	V	I	K	I	W	N	L	K	E	I	I	V	G	E	V	Y	S	S	S	L	T	Y	D	C	S	S	T	V
Template Known Secondary structure		G												G	G	G											T	T	T	T	S										S	S	S								T	T	S												T	T				S		S						S	S
Template Predicted Secondary structure
Template SS confidence
		1052	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.
Query Sequence		E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	.	.	.	.	.	.	.	.	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I
Query Conservation																																.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	I	T	M	I	P	N	F	D	A	F	A	V	S	S	K	D	G	Q	I	I	V	L	K	V	N	H	Y	Q	Q	E	S	E	V	K	F	L	N	C	E	C	I	R	K	I	N	L	K	N	F	G	K	N	E	Y	A	V	R	M	R	A	F	V	N	E	E	K	S	L	L	V	A	L	T	N	L	S	R	V
Template Known Secondary structure								T	T	S	S							T	T	S													T	T															G	G	G	G	S	S													S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		1132	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.													.
Template Conservation																					.	.	.	.	.	.	.	.													.
Template Sequence		I	I	F	D	I	R	T	L	E	R	L	Q	I	I	E	N	S	P	R	.	.	.	.	.	.	.	.	H	G	A	V	S	S	I	C	I	D	E	E	.	C	C	V	L	I	L	G	T	T	R	G	I	I	D	I	W	D	I	R	F	N	V	L	I	R	S	W	S	F	G	D	H	A	P	I	T	H	V	E	V
Template Known Secondary structure						T	T	T											G	G	.	.	.	.	.	.	.	.	G										T	T	.	S								T	T	S							T	T	T	T							B		T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.													.
Template SS confidence
		1212	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230									.	.	.	.	.	.	.	.	.	1240	.	.		.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	R	F	Y	R	F
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		C	Q	F	Y	.	.	.	G	K	N	S	V	I	V	V	G	G	S	S	K	T	F	L	T	I
Template Known Secondary structure			T	T	T	.	.	.		T	T								S	T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		1283	.	.	.				.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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