Job Description P39382 Confidence 99.90% Date Thu Jan 5 12:00:14 GMT 2012 Rank 2 Aligned Residues 249 % Identity 13% Template c3fw0A_ PDB info PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate) Resolution 2.52 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																									.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	A	S	F	Q	N	Y	H	A	T	I	D	G	K	.	.	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	I	V	E	M	T	T	N	G	D
Query Conservation																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	H	H	H	H	H	D	F	H	V	E	E	E	L	D	W	P	G	V	Y	L	L	P	G	Q	V	S	G	V	A	L	D	S	K	N	N	L	V	I	F	H	R	G	D	H	V	W	D	G	N	S	F	D	S	K	F	V	Y	Q	Q	R	G	L	G	P	I	E	E	D	T	I	L	V	I	D	P	N	N	A	E
Template Known Secondary structure						S		S							T	T		G	G	G	G				S									T	T									T	T					T	T	T	B		T	T			B	S		G	G	G		S			S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.
Predicted Secondary structure																																											.																																.
Query SS confidence																																											.																																.
Query Sequence		F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	.	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	.	D	H	T	F	W	F
Query Conservation																																											.																																.
Alig confidence																																											.																																.
Template Conservation
Template Sequence		I	L	Q	S	S	G	K	N	L	F	Y	L	P	H	G	L	S	I	D	T	D	G	N	Y	W	V	T	D	V	A	L	H	Q	V	F	K	L	D	P	H	S	K	E	G	P	L	L	I	L	G	R	S	M	Q	P	G	S	D	Q	N	H	F	C	Q	P	T	D	V	A	V	E	P	S	T	G	A	V	F	V	S
Template Known Secondary structure								T	T	T		S	S								T	T								T	T	T	T							T	T		S	S			S						T	T				S	S	T	T			S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		D	G	Y	C	N	S	R	I	V	Q	F	S	P	S	G	K	F	V	T	Q	W	G	E	E	S	S	G	S	S	P	R	P	G	Q	F	S	V	P	H	S	L	A	L	V	P	H	L	D	Q	L	C	V	A	D	R	E	N	G	R	I	Q	C	F	K	T	D	T	K	E	F	V	R	E	I	K	H	A	S	F	G
Template Known Secondary structure				S	S									T	T													S	S	S			T	T			S	S								T	T	T	T							G	G	G	T							T	T	T										G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
																																														248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		R	N	V	F	A	I	S	Y	I	P	G	F	L	F	A	V	N	G	K	P	Y	F	G	D	Q	E	P	V	Q	G	F	V	M	N	F	S	S	G	E	I	I	D	V	F	K	P	V	R	K	H	F	D	M	P	H	D	I	V	A	S	E	D	G	T	V	Y	I	G	D	A	H	T	N	T	V	W	K	F	T	L
Template Known Secondary structure		T									T	T											T	T		S										T	T	T										S	S	S			S	S								T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		732	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.
		283	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		812	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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