Job Description P39382 Confidence 98.92% Date Thu Jan 5 12:00:14 GMT 2012 Rank 91 Aligned Residues 225 % Identity 12% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																			.																															.													.
Query SS confidence																			.																															.													.
Query Sequence		K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	.	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	.	D	F	V	K	D	L	E	T	I	E	Y	I	.	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I
Query Conservation																			.																															.													.
Alig confidence																			.																															.													.
Template Conservation
Template Sequence		Q	K	A	A	P	F	D	R	R	A	T	S	L	A	W	H	P	T	H	P	S	T	V	A	V	G	S	K	G	G	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S	S	M	E	G	T	T	R	L	Q
Template Known Secondary structure								S	S									S	S		S	S							S	S	S							S	S	S		S									S	S	S								B		T	T		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																																																						.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		D	F	K	G	N	I	L	R	V	F	A	S	S	D	T	.	.	.	.	.	.	.	I	N	I	W	F	C	S	L	D	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W	N	L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F
Template Known Secondary structure			T	T	T										S	S	.	.	.	.	.	.	.	T	T										T	T	T	T							S	S	S							T	T			B							S	S	S									T	T	S	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
																																203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	.	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																		.																.	.
Template Conservation																																														.																																		.	.
Template Sequence		L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	V	R	G	K	A	S	F	L	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	.	R	L	L	T	T	D	Q	K	S	E	I	R	V	Y	S	A	S	Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	.	.
Template Known Secondary structure							T	T	S							T	T	T			S	S	S			S						S	S									T	T	S	S	.							S	S	S							T	T		S	S	S		S											.	.
Template Predicted Secondary structure																																														.																																		.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.														.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	N	R	F	Y	R	F	T	P	Q	S	S	H
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K
Template Known Secondary structure		.	T	T	S									S	S	S	S										T	T	S			S	S	S				S							S	S	S
Template Predicted Secondary structure		.
Template SS confidence
			335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions