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Job DescriptionP39382
Confidence98.60%DateThu Jan 5 12:00:14 GMT 2012
Rank112Aligned Residues222
% Identity12%Templatec3ei3B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60....... ..70.........80.........90 .........100.........110 .........120.......
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Query Sequence  KEIAGITNNISSLTWSA. QSNTLFSTINKPAAIVEMTTNGD. FIRTIPLDFVKDLETIEYIG. DNQFVISDERDYAIYVI
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Template Sequence  RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR
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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   128.130.........140..
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Query Sequence  SLTPNSEVKILKKIK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD
Template Known Secondary structure  TTS




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   221........230.........240.........250.........260.........270.........280.........290.........300
 
   143......150.........160. ........170.........180.........190.........200......
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Query Sequence  . . . . . . . . . . . . . . . IPLQDSPTNCGFEGLAYSR. QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDEALQRQFTLDDV
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Template Sequence  ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK. .
Template Known Secondary structure  SGGG

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B


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   301........310.........320.........330.........340.........350.........360.........370........
 
   207..210.........220.. .......230.... .....240.........250.........260.........270.......
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Query Sequence  SGAEFNQQKNTLLVLS. . . . . . . . HESRALQEVTLV. GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRF
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Template Sequence  . . ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL. . . . . . . NKFSPTGDVLASGMGFNI
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   379380.........390.........400.........410.........420.........430. ........440.........
 
   278.280...
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Query Sequence  YRFTPQ
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Template Sequence  LIWNRE
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   450.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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