Job Description P39382 Confidence 98.08% Date Thu Jan 5 12:00:14 GMT 2012 Rank 132 Aligned Residues 235 % Identity 10% Template c3c5mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Resolution 2.60 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																	.	.	.	.	.														.	.
Query SS confidence																	.	.	.	.	.														.	.
Query Sequence		D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	.	.	.	.	.	T	W	S	A	Q	S	N	T	L	F	S	T	I	.	.	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D
Query Conservation																	.	.	.	.	.														.	.
Alig confidence																	.	.	.	.	.														.	.
Template Conservation
Template Sequence		K	V	T	R	L	T	P	T	D	I	I	C	H	R	N	Y	F	Y	Q	K	C	F	T	Q	D	G	K	K	L	L	F	A	G	D	F	D	G	N	R	N	Y	Y	L	L	N	L	E	T	Q	Q	A	V	Q	L	T	E	G	K	G	D	N	T	F	G	G	F	I	S	T	D	E	R	A	F	F	Y	V	K	N	E
Template Known Secondary structure							S		T	T	S							T	T	S			B		T	T	S									T	T	S	S								T	T	T	T								S	S		B		T	T	T					T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																																																									.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	P	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	L	X	K	V	D	L	E	T	L	E	E	Q	V	I	Y	T	V	D	E	E	W	K	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	L	K	R	D	W	Q	P	L	T	S	W	E	K	F	A	E	F	Y	H	T	N	P	T	C	R	L	I	K	V	D	I	E	T	G	E	L	E
Template Known Secondary structure		T							T	T	T											T	T											T	T	S	S									G	G	G						S										T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																		.	.																												.	.	.
Template Conservation																																																		.	.
Template Sequence		V	I	H	Q	D	T	A	W	L	G	H	P	I	Y	R	P	F	D	D	S	T	V	G	F	C	H	E	G	P	H	D	L	V	D	A	R	X	W	L	V	N	E	D	G	S	N	V	R	.	.	K	I	K	E	H	A	E	G	E	S	C	T	H	E	F	W	I	P	D	G	S	A	X	A	Y	V	S	Y	F	K
Template Known Secondary structure							S	S									T	T											S		S	S	S		S								T	T	S					.	.		S	S				T	T										T	T	S	S									T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
			223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.							260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure		.																																						.	.	.	.	.	.														.
Query SS confidence		.																																						.	.	.	.	.	.														.
Query Sequence		.	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	.	.	.	.	.	.	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation		.																																						.	.	.	.	.	.														.
Alig confidence		.																																						.	.	.	.	.	.														.
Template Conservation
Template Sequence		G	Q	T	D	R	V	I	Y	K	A	N	P	E	T	L	E	N	E	E	V	X	V	X	P	P	C	S	H	L	X	S	N	F	D	G	S	L	X	V	G	D	G	C	D	A	N	I	E	N	D	P	F	L	Y	V	L	N	T	K	A	K	S	A	Q	K	L	C	K	H	S	T
Template Known Secondary structure		T	T										T	T	T											S								S	S	S	S																						T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions