Job Description P39382 Confidence 98.90% Date Thu Jan 5 12:00:14 GMT 2012 Rank 92 Aligned Residues 223 % Identity 12% Template c3acpA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome Resolution 2.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	N	Y	H	A	T	I	D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R
Query Conservation
Alig confidence																																																									.
Template Conservation																																																									.
Template Sequence		V	L	D	S	N	F	N	L	Q	R	E	I	D	Q	A	H	V	S	E	I	T	K	L	K	F	F	P	S	G	E	A	L	I	S	S	S	Q	D	M	Q	L	K	I	W	S	V	K	D	G	S	N	P	R	T	L	.	I	G	H	R	A	T	V	T	D	I	A	I	I	D	R	G	R	N	V	L	S	A	S	L
Template Known Secondary structure					T	T								T	T	S	S	S	S									T	T	S	S							T	T	S							T	T	T								.				S	S									T	T	T	T							T
Template Predicted Secondary structure																																																									.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	T	I	R	L	W	E	C	G	T	G	T	T	I	H	T	F	N	R	K	E	N	P	H	D	G	V	N	S	I	A	L	F	V	G	T	D	R	Q	L	H	E	I	S	T	S	K	K	N	N	L	E	F	G	T	Y	G	K	Y	V	I	A	G	H	V	S	G	V	I	T	V	H	N	V	F	S	K	E	Q
Template Known Secondary structure		T	S							T	T	T	T									T	T		T	T	S										S					T	T	T	S	S	S					T	T		S	S		T	T								T	T	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Sequence		T	I	Q	L	P	S	K	F	T	C	.	.	.	.	.	.	.	.	.	S	C	N	S	L	T	V	D	G	N	N	A	N	Y	I	Y	A	G	Y	E	N	G	M	L	A	Q	W	D	L	R	S	P	.	.	.	.	.	.	.	E	C	P	V	G	E	F	L	I	N	E	G	T	P	I	N	N	V	Y	F	A	A
Template Known Secondary structure								T	T	S	S	.	.	.	.	.	.	.	.	.									S	S		T	T							T	T	S							T	T	S	T	.	.	.	.	.	.	.	T	S		S					S	S	T	T	S									T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.										.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320								.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	I	Y	I	V	S	E	P	N	R	F	Y	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	L	F	V	S	S	G	F	D	T	S	I	K	L
Template Known Secondary structure		T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions