Job Description P39382 Confidence 99.64% Date Thu Jan 5 12:00:14 GMT 2012 Rank 36 Aligned Residues 238 % Identity 12% Template c3a9gA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form Resolution 2.39 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.
Predicted Secondary structure																																																			.	.	.																					.	.	.	.
Query SS confidence																																																			.	.	.																					.	.	.	.
Query Sequence		N	Y	H	A	T	I	D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	.	.	.	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	.	.	.	.	N	Q	F	V
Query Conservation																																																			.	.	.																					.	.	.	.
Alig confidence									.	.																										.	.														.	.	.																					.	.	.	.
Template Conservation									.	.																										.	.
Template Sequence		E	W	K	F	K	I	S	.	.	E	V	A	S	D	L	E	V	P	W	S	I	A	P	L	G	G	G	R	Y	L	V	T	E	R	.	.	P	G	R	L	V	L	I	S	P	S	G	K	K	L	V	A	S	F	D	V	A	N	V	G	E	A	G	L	L	G	L	A	L	H	P	E	F	P	K	K	S	W	V	Y
Template Known Secondary structure									.	.					S		S										T	T							T	.	.	T	T							S	S													S	T	T		S								T	T	T	T	T	S
Template Predicted Secondary structure									.	.																										.	.
Template SS confidence
		33	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		116	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.											.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	D	E	R	D	.	.	.	.	.	.	.	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	.	.	.	.	.	.	.	.	.	.	K	N	P	I	E	V	Y
Query Conservation								.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	A	S	Y	F	A	E	G	G	H	I	R	N	R	V	I	R	G	R	L	D	G	S	T	F	K	L	K	E	V	K	T	L	I	D	G	I	P	G	A	Y	I	H	N	G	G	R	I	R	F	G	P	D	G	M	L	Y	I	T	T	G	D	A	A	D	P	R	L	A	Q	D	L	S	S	L	A	G	K	I
Template Known Secondary structure									G	G	G													S	S	S																	S	S										T	T	S									T	T		G	G	G	G	T		T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	V	D	E	E	G	R	P	P	A	D	N	P	F	P	N	S	P	I	W	S	Y	G	H	R	N	P	Q	G	I	D	W	H	R	A	S	G	V	M	V	A	T	E	H	G	P	V	G	H	D	E	V	N	I	I	L	K	G	G	N	Y	G	W	P	L	A	T	G	K	A	G	R	G	E	F	V	D	P	V
Template Known Secondary structure						T	T	S				T	T	S	S	S	T	T									S									T	T	T										S	S	S									T	T		B			T	T	T			S					T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
																											226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																											.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																											.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	.	.	.	.	.	.	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		I	D	T	G	S	E	T	W	A	P	S	G	A	S	F	V	H	G	D	M	F	P	G	L	R	G	W	L	L	I	A	C	L	R	G	S	M	L	A	A	V	N	F	G	D	N	M	E	V	R	K	I	S	T	F	F	K	N	V	F	G	R	L	R	D	V	V	I	D	D	D	G	G	I	L	I	S	T	S	N
Template Known Secondary structure					T	T													S	S	S		G	G	G	T	T							T	T	T	T									G	G	G										T	T	T	S										T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
											273	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	P	N	R	F	Y	R	F	T	P	Q	S
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	G	R	G	S	L	R	A	G	D	D	K	I	L	K	I	V	S	E	Q
Template Known Secondary structure		T	S	S	S	S				T	T		S								T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions