Job Description P39382 Confidence 97.65% Date Thu Jan 5 12:00:14 GMT 2012 Rank 147 Aligned Residues 219 % Identity 10% Template c2xznR_ PDB info PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	.	.	.	.	.	.	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	.	.	.	.	.	.	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D
Query Conservation																	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	L	E	G	H	S	D	W	V	T	S	I	V	A	G	F	S	Q	K	E	N	E	D	S	P	V	L	I	S	G	S	R	D	K	T	V	M	I	W	K	L	Y	E	E	E	Q	N	G	Y	F	G	I	P	H	K	A	L	T	G	H	N	H	F	V	S	D	L	A	L	S	Q	E	N	C	F	A	I	S	S
Template Known Secondary structure								S	S											S	S	T	T											T	T	S									S	S			S	S	B	S											S	S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence		S	W	D	K	T	L	R	L	W	D	L	R	T	G	T	T	Y	K	R	F	V	G	.	.	.	.	.	.	.	.	.	H	Q	S	E	V	Y	S	V	A	F	S	P	D	N	R	Q	I	L	S	A	G	A	E	R	E	I	K	L	W	N	I	L	G	E	C	K	F	.	.	.	.	.	.	.	.	S	S	A	E
Template Known Secondary structure			T	T	S							T	T	S	S									.	.	.	.	.	.	.	.	.			S									S	S	T	T							T	T	S							S	S	S					.	.	.	.	.	.	.	.				T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.									.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	R	F	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	N	H	S	D	W	V	S	C	V	R	Y	S	P	I	M	K	S	A	N	K	V	Q	P	F	A	P	Y	F	A	S	V	G	W	D	G	R	L	K	V	W	N	T	N	F	Q	I	R	Y	T	F	K	A	H	E	S	N	V	N	H	L	S	I	S	P	N	G	K	Y	I	A	T	G	G	K	D	K	K	L
Template Known Secondary structure		T	T	S		S	S													S		S				S	S									T	T	S							T	T	T										S	S									T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	T	P	Q	S	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	W	D	I	L	N	L
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions