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Job DescriptionP39382
Confidence27.30%DateThu Jan 5 12:00:14 GMT 2012
Rank199Aligned Residues251
% Identity9%Templatec2xe4A_
PDB info PDB header:hydrolase/inhibitorChain: A: PDB Molecule:oligopeptidase b; PDBTitle: structure of oligopeptidase b from leishmania major
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  FVQSCARKSNHAASFQNYHATIDGKEIAGITNNI. SSLTWSAQSNTLFSTINKPA. . . . AIVEMTTNG. . . DFIRTIPLD
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Template Sequence  VAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH
Template Known Secondary structure  SSSSS
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   99100.........110...... ...120.........130.........140.........150.........160.........170.....
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Query Sequence  FVKDLETIEYIGDNQFVI. . . SDERDYAIYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPI
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Template Sequence  NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI. . . . . VRPREKGVRYDVQMHGTSHLVILTNEGGAV
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   249250.........260.........270.........280.........290... ......300.........310.........320...
 
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Query Sequence  EVYKVNGLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIK
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Template Sequence  NHKLLIAPRGQPS. . . DWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPI
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   324.....330...... ...340.........350.........360.........370.........380.........390.........400
 
   256...260.. ..... ..270..... ....280.....
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Query Sequence  QAEGVAM. . . . DASGN. . IYIVSEPN. . . RFYRFTPQSS
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Template Sequence  FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH
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   401........410.........420.........430.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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