Job Description P39382 Confidence 98.67% Date Thu Jan 5 12:00:14 GMT 2012 Rank 105 Aligned Residues 235 % Identity 14% Template c2wg3C_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:hedgehog-interacting protein; PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium Resolution 2.60 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.													.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	.	.	.	.	.	.	.	.	.	.	.	.	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	.	.	.	.	N	Q
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		I	Q	E	V	V	S	G	L	R	Q	P	V	G	A	L	H	S	G	D	G	S	Q	R	L	F	I	L	E	K	E	G	Y	V	K	I	L	T	P	E	G	E	I	F	K	E	P	Y	L	D	I	H	K	L	V	Q	S	G	I	K	G	G	D	E	R	G	L	L	S	L	A	F	H	P	N	Y	K	K	N	G	K
Template Known Secondary structure										S	S								S	S	S	S								T	T	T							T	T	S		B		S	S		S				T	T	T	B					S	S	S				S								T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																																							.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																																							.	.	.	.	.	.	.	.	.
Query Sequence		F	V	I	S	D	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	I	Y	V	I	S	L	T	P	.	.	.	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																																							.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	V	S	Y	T	T	N	Q	E	R	W	A	I	G	P	H	D	H	I	L	R	V	V	E	Y	T	V	S	R	K	N	P	H	Q	V	D	L	R	T	A	R	V	F	L	E	V	A	E	L	H	R	K	H	L	G	G	Q	L	L	F	G	P	D	G	F	L	Y	I	I	L	G	D	G	M	I	T	L	D	D
Template Known Secondary structure												S	S		S	S	S	S											B		T	T		T	T	S	B		G	G	G										S	S	S	S	S									T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
										170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.										.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	.	.	.	.	.	.	.	.	.	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	E	M	D	G	L	S	D	F	T	G	S	V	L	R	L	D	V	D	T	D	M	C	N	V	P	Y	S	I	P	R	S	N	P	H	F	N	S	T	N	Q	P	P	E	V	F	A	H	G	L	H	D	P	G	R	C	A	V	D	R	H	P	T	D	I	N	I	N	L	T	I	L	C	S	D	S	S	A	R
Template Known Secondary structure						T	T			S		T	T						B						S	S		S		B			T	T	S	T	T	T	T		S	S	S		T	T							S	S			B					S	S		S	S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
																																							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																																						.
Template Sequence		I	L	Q	I	I	Y	E	S	E	P	S	L	L	E	F	K	P	P	L	V	G	G	F	V	Y	R	G	C	Q	S	E	R	L	Y	G	S	Y	V	F	G	D	R	N	G	N	F	L	T	L	Q	Q	Q	.	W	Q	E	K	P	L	C	L	G	T	S	G	S	C	R	G	Y	F	S	G	H	I	L	G	F	G	E
Template Known Secondary structure									S																				S	S		T	T	T	T	T							T	T	S									.											T	T	S	S		S				S
Template Predicted Secondary structure																																																						.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		263	.	.	.	.	.	.	270	.	.									.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		D	A	S	G	N	I	Y	I	V	S	.	.	.	.	.	.	.	.	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	L	G	E	V	Y	I	L	S	S	S	K	S	M	T	Q	T	H	N	G	K	L	Y	K	I	V	D	P	K	R
Template Known Secondary structure			T	T									S	S		G	G	G		S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions