Job Description P39382 Confidence 99.04% Date Thu Jan 5 12:00:14 GMT 2012 Rank 83 Aligned Residues 176 % Identity 12% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	F	Q	N	Y	H	A	T	I	D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	.	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D
Query Conservation																												.
Alig confidence																												.																															.
Template Conservation																																																											.
Template Sequence		T	F	A	E	D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q	E	A	L	L	G	T	T	I	M	N	N	I	V	I	W	N	L	K	T	G	Q	L	L	K	K	M	.	H	I	D	D	A	S	V	C	H	K	A	Y	S	E	M	G	L	L	F	I	V	L
Template Known Secondary structure					T	T	S												S	S										T	S	T	T							T	T	S							T	T	T								.															T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		993	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.		1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q
Query Conservation
Alig confidence																																	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																																							.	.	.	.	.
Template Sequence		S	P	V	F	Q	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	P	P	G	Q	A	G	R	.	.	.	.	.	.	F	L	E	G	D	V	K	D	H	C	A	A	A	I	L	T	S	G	T	I	A	I	W	D	L	L	L	G	Q	C	T	A	L	L	P	P	V	Q	.	.	.	.	.
Template Known Secondary structure												T	T	T	T												T	T					.	.	.	.	.	.								T	T							T	T	S							T	T	T		S										.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.																																							.	.	.	.	.
Template SS confidence
		1075	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.							.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.													.
Template Sequence		.	.	.	.	.	.	H	W	S	F	V	K	W	S	G	T	D	S	.	H	L	L	A	G	Q	K	D	G	N	I	F	V	Y	H	Y	S
Template Known Secondary structure		.	.	.	.	.	.									S	S	S	S	.							T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.													.
Template SS confidence
								1158	.	1160	.	.	.	.	.	.	.	.	.		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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