Job Description P39382 Confidence 98.79% Date Thu Jan 5 12:00:14 GMT 2012 Rank 99 Aligned Residues 243 % Identity 16% Template c2pm9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat Resolution 3.30 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																															.	.																															.	.	.
Query SS confidence																															.	.																															.	.	.
Query Sequence		C	A	R	K	S	N	H	A	A	S	F	Q	N	Y	H	A	T	I	D	G	K	E	I	A	G	I	T	N	N	.	.	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	.	.	.	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T
Query Conservation																															.	.																															.	.	.
Alig confidence																															.	.																															.	.	.
Template Conservation
Template Sequence		A	N	F	S	T	D	S	S	L	E	L	W	S	L	L	A	A	D	S	E	K	P	I	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I	I	A	G	A	L	D	N	G	S	L	E	L	Y	S	T	N	E	A	N	N	A	I	N	S	M	A	R	F	S	N	H	S	S	S	V	K	T
Template Known Secondary structure		S	S												S	S	S	G	G	G		S		S						S	S									S	S	S	S							S	S	S								S	S	T	T	S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		106	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure							.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	Y	I	G	.	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	F	N	A	K	Q	D	N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T	E	S	P	S	N	Y	T	P	L	T	P	G	Q	S	M	S	S	V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N	F	A	S	I	W	D	L	K	A	K
Template Known Secondary structure						S	S	S	T	T	B						S	S	S				B		B	T	T	T	T	S	S		T	T	T				B					S			S	S										S	S		T	T						S	S	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
																																																																												161	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	D	H	T	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	V	I	H	L	S	Y	T	S	P	N	S	G	I	K	Q	Q	L	S	V	V	E	W	H	P	K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I	W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L	D	W	C	H	Q	D	E	H	L	L
Template Known Secondary structure													S	S													S	S		T	T									S	S	S								T	T	S	T	T	S		S	B				S			S	S									S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	.	.	.	.	.	E	V	I	G	E	M
Query Conservation																																																																							.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	S	G	R	D	N	T	V	L	L	W	N	P	E	S	A	E	Q	L	S	Q	F	P	A	R	G	N	.	.	.	.	.	.	.	.	.	.	W	C	F	K	T	K	F	A	P	E	A	P	D	L	F	A	C	A	S	F	D	N	K	I	E	V	Q	T	L	Q	N	L	T	N	T	L	D	E	S	K	E	K
Template Known Secondary structure						S	S	S							S	S	S										S	S	S	.	.	.	.	.	.	.	.	.	.									T	T		T	T							S	S	S							S						S	S					S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.											.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P	Q
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		P	S	V	F	H	L	Q	A	P	T	W	Y	G	E	P	S	P	A	A	H	W	A	F	G	G	K	L	V	Q	I	T	P	D	G	K	G	V	S	I	T	N	P	K
Template Known Secondary structure				S	S						S	T	T				S							T	T	T					B		T	T	S	S		B			B
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions