Job Description P39382 Confidence 97.89% Date Thu Jan 5 12:00:14 GMT 2012 Rank 141 Aligned Residues 217 % Identity 13% Template c2ovqB_ PDB info PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S
Query Conservation
Alig confidence																	.																																.													.	.
Template Conservation																	.																																.													.	.
Template Sequence		S	P	K	V	L	K	G	H	D	D	H	V	I	T	C	.	L	Q	F	C	G	N	R	I	V	S	G	S	D	D	N	T	L	K	V	W	S	A	V	T	G	K	C	L	R	T	L	.	V	G	H	T	G	G	V	W	S	S	Q	M	.	.	R	D	N	I	I	I	S	G	S	T	D	R	T	L	K	V	W	N
Template Known Secondary structure									S	T	T	S					.					T	T							T	T	S							T	T	T								.				S	S								.	.		T	T							T	T	S
Template Predicted Secondary structure																	.																																.													.	.
Template SS confidence
		2372	.	.	.	.	.	.	.	2380	.	.	.	.	.	.		.	.	.	2390	.	.	.	.	.	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.		.	.	2420	.	.	.	.	.	.	.	.	.			2430	.	.	.	.	.	.	.	.	.	2440	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	P	N	S	E	V	K	I	L	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	T	G	E	C	I	H	T	L	Y	G	H	T	S	T	V	R	C	M	H	L	H	E	K	R	V	V	S	G	S	R	D	A	T	L	R	V	W	D	I	E	T	G	Q	C	L	H	V	L	M	G	H	V	A	A	V	R	C	V	Q	Y	D	G	R	R	V	V	S	G	A	Y	D	F	M	V	K	V	W	D
Template Known Secondary structure		T	T	T											S	S									T	T							T	T	S							T	T	T											S	S									S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		2448	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.	.	.	.	2470	.	.	.	.	.	.	.	.	.	2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.
																																											141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	T	E	T	C	L	H	T	L	Q	G	H	T	N	R	V	Y	S	L	Q	F	D	G	I	H	V	V	S	G	S	L	D	T	S	I	R	V	W	D	V	E	T	G	N	C	I	H	T	L	T	G	H	Q	S	L	T	S	G	M	E	L	K	D	N	I	L	V	S	G	N	A	D	S	T	V	K	I	W	D
Template Known Secondary structure		G	G	G	T										S	S									S	S							T	T	S							T	T	T												S									T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		2528	.	2530	.	.	.	.	.	.	.	.	.	2540	.	.	.	.	.	.	.	.	.	2550	.	.	.	.	.	.	.	.	.	2560	.	.	.	.	.	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580	.	.	.	.	.	.	.	.	.	2590	.	.	.	.	.	.	.	.	.	2600	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	.	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E
Query Conservation																																																									.
Alig confidence																	.	.	.	.	.	.	.												.	.	.																				.																			.	.	.	.
Template Conservation																	.	.	.	.	.	.	.												.	.	.																																							.	.	.	.
Template Sequence		I	K	T	G	Q	C	L	Q	T	L	Q	G	P	N	K	.	.	.	.	.	.	.	H	Q	S	A	V	T	C	L	Q	F	N	.	.	.	K	N	F	V	I	T	S	S	D	D	G	T	V	K	L	W	D	L	K	T	G	E	F	I	R	N	L	V	T	L	E	S	G	G	S	G	G	V	.	.	.	.	V	W
Template Known Secondary structure		T	T	T									S	T	T		.	.	.	.	.	.	.		S	S									.	.	.	S	S							T	T	S							T	T	T											T	T	G	G	G	T			.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.												.	.	.																																							.	.	.	.
Template SS confidence
		2608	.	2610	.	.	.	.	.	.	.	.	.	2620	.	.								.	.	.	.	.	.	.	2630	.	.	.				.	.	.	.	.	.	2640	.	.	.	.	.	.	.	.	.	2650	.	.	.	.	.	.	.	.	.	2660	.	.	.	.	.	.	.	.	.	2670	.					.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.								.	.	.	.	280	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		G	V	A	M	D	A	S	G	N	I	Y	I	V	S	E	P	N	.	.	.	.	.	.	.	R	F	Y	R	F	T	P	Q
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	R	A	S	N	T	K	L	V	C	A	V	G	S	R	N	G	T	E	E	T	K	L	L	V	L	D	F	D	V	D
Template Known Secondary structure							S	S									S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		2674	.	.	.	.	.	2680	.	.	.	.	.	.	.	.	.	2690	.	.	.	.	.	.	.	.	.	2700	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions