Job Description P39382 Confidence 98.95% Date Thu Jan 5 12:00:14 GMT 2012 Rank 88 Aligned Residues 212 % Identity 7% Template c2j04B_ PDB info PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic Resolution 3.2 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.																								.	.	.	.	.	.
Query SS confidence																																		.	.	.	.																								.	.	.	.	.	.
Query Sequence		N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	.	.	.	.	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	.	.	.	.	.	.	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S
Query Conservation																																		.	.	.	.																								.	.	.	.	.	.
Alig confidence																																		.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	E	N	T	D	I	G	K	D	I	Q	Y	L	A	V	A	V	S	Q	S	S	C	I	Q	I	F	K	M	N	T	S	T	L	H	C	V	K	V	Q	T	I	V	H	S	F	G	E	V	W	D	L	K	W	H	E	G	C	H	A	P	H	L	V	G	C	L	S	F	V	S	Q	E	G	T	I	N	F	L	E
Template Known Secondary structure							S	S		S	S																					T	T	T															S								S	S				S	S	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		129			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		L	.	.	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V
Query Conservation			.	.
Alig confidence			.	.																																				.																															.	.	.	.	.	.	.	.	.
Template Conservation																																								.																															.	.	.	.	.	.	.	.	.
Template Sequence		I	I	D	N	A	T	D	V	H	V	F	K	M	C	E	K	P	S	L	T	L	S	L	A	D	S	L	I	T	T	F	D	F	L	S	P	T	T	.	V	V	C	G	F	K	N	G	F	V	A	E	F	D	L	T	D	P	E	V	P	S	F	Y	D	Q	V	H	D	S	.	.	.	.	.	.	.	.	.	Y	I
Template Known Secondary structure						S	S	S	S	S							S		S						T	T	T								S	S	S	S		.						T	T	S							T	T	B		S	S		S						S	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.										.	.
		207	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure						.	.																																																															.
Query SS confidence						.	.																																																															.
Query Sequence		S	G	A	E	.	.	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P	Q
Query Conservation						.	.																																																															.
Alig confidence						.	.																																								.	.	.	.	.	.																		.
Template Conservation																																															.	.	.	.	.	.
Template Sequence		L	S	V	S	T	A	Y	S	D	F	E	D	T	V	V	S	T	V	A	V	D	G	Y	F	Y	I	F	N	P	K	D	I	A	T	T	K	T	T	V	S	R	F	R	G	S	.	.	.	.	.	.	N	L	V	P	V	V	Y	C	P	Q	I	Y	S	Y	I	Y	S	D	G	A	S	S	L	R	A	V	P	S	R
Template Known Secondary structure										T	T	S									T	T	S							G	G	G												S			.	.	.	.	.	.	S								T	T	T	T							S	S	S							T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.							.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		284	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	F
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		542	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions