Job Description P39382 Confidence 95.25% Date Thu Jan 5 12:00:14 GMT 2012 Rank 171 Aligned Residues 219 % Identity 10% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	.	.	.	.	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	G	T	V	S	L	G	T	W	A	V	S	W	D	G	K	K	V	A	F	A	Q	K	P	N	A	A	D	E	A	V	L	H	V	I	D	V	D	S	G	E	W	S	K	V	D	V	I	E	G	G	K	Y	A	T	P	K	W	T	P	D	S	K	G	F	Y	Y	E	W	L	P	T	D	P	S	I	K	V	D
Template Known Secondary structure		S	S	S											T	T	S	S									T	T		S									T	T	T			B		S	S			B	S			T	T							T	T	S	S											T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		E	R	P	G	Y	T	T	I	R	Y	H	T	L	G	T	E	P	S	K	D	T	V	V	H	.	.	.	.	.	E	R	T	G	D	P	T	T	F	L	Q	S	D	L	S	R	D	G	K	Y	L	F	V	Y	I	L	R	G	W	S	E	N	D	V	Y	W	K	R	P	G	E	K	D	F	R	L	L	V	K	G	V
Template Known Secondary structure		T	G	G	G	G								T	T	S		G	G	G						.	.	.	.	.						T	T									T	T	S	S									T	T	T									T	T		S	S								S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
																																		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	K	Y	E	V	H	A	W	K	D	R	F	Y	V	L	T	D	E	G	A	P	R	Q	R	V	F	E	V	D	P	A	K	P	A	R	A	S	W	K	E	I	V	P	E	D	S	S	A	S	L	L	S	V	S	I	V	G	G	H	L	S	L	E	Y	L	K	D	A	T	S	E	V	R	V	A	T	L	K	G
Template Known Secondary structure		S									T	T								T	T		T	T							B	T	T	B		S	G	G	G									S	S										T	T									T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																		.	.									.	.	.
Query SS confidence																																		.	.									.	.	.
Query Sequence		E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	.	I	Y	I	V	S	E	P	N	.	.	.	R	F	Y	R	F	T	P	Q	S	S
Query Conservation																																		.	.									.	.	.
Alig confidence															.	.	.	.	.	.	.	.												.	.									.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence		K	P	V	R	T	V	Q	L	P	G	V	G	A	.	.	.	.	.	.	.	.	A	S	N	L	M	G	L	E	D	L	D	D	A	Y	Y	V	F	T	S	F	T	T	P	R	Q	I	Y	K	T	S	V	S	T	G
Template Known Secondary structure										S	S	S	S		.	.	.	.	.	.	.	.					B	S		T	T		S									T	T										T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.									.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions