Job Description P39382 Confidence 98.22% Date Thu Jan 5 12:00:14 GMT 2012 Rank 127 Aligned Residues 226 % Identity 8% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.									80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	.	.	.	.	.	.	.	.	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																	.																								.
Template Conservation																																															.																								.
Template Sequence		N	A	S	N	Y	G	L	S	P	D	R	Q	F	V	Y	L	E	S	D	Y	S	K	L	W	R	Y	S	Y	T	A	T	Y	Y	I	Y	D	L	S	N	G	E	F	V	R	G	.	N	E	L	P	R	P	I	Q	Y	L	C	W	S	P	V	G	S	K	L	A	Y	V	Y	.	Q	N	N	I	Y	L	K	Q	R	P
Template Known Secondary structure		T		S						T	T	S	S												S	S	S											T	T	T	T					S	.	S				S	S	B							S	S	T	T							.	T	T						S	S	T
Template Predicted Secondary structure																																															.																								.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.										.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	.	.	.	.	.	.	.	.	.	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	P	P	F	Q	I	T	F	N	G	R	E	N	K	I	F	N	G	I	P	D	W	V	Y	E	E	E	M	L	A	T	K	Y	A	L	W	W	S	P	N	G	K	F	L	A	Y	A	E	F	N	D	T	D	I	P	V	I	A	Y	S	Y	Y	G	D	E	Q	Y	P	R	T	I	N	I	P	Y	P	K	A	G
Template Known Secondary structure		T	S										B	T	T	T				S	S									T	T		S	S							T	T	S	S										T	T	S										S	S	S	S										B	T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																											.	.	.																		.	.	.
Query SS confidence																																																											.	.	.																		.	.	.
Query Sequence		K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	.	.	.	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	.	.	.
Query Conservation																																																											.	.	.																		.	.	.
Alig confidence																																																											.	.	.																		.	.	.
Template Conservation
Template Sequence		A	K	N	P	V	V	R	I	F	I	I	D	T	T	Y	P	A	Y	V	G	P	Q	E	V	P	V	P	A	M	I	A	S	S	D	Y	Y	F	S	W	L	T	W	V	T	D	E	R	V	C	L	Q	W	L	K	R	V	Q	N	V	S	V	L	S	I	C	D	F	R	E	D	W	Q	T	W	D	C	P	K	T	Q
Template Known Secondary structure		S												S	S																		T	S										S	S	S	S									S	S	T	T											S	S	S	S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
				244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.									.	.	.
Query SS confidence		.	.																									.	.									.	.	.
Query Sequence		.	.	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	.	I	Y	I	V	S	E	P	N	.	.	.	R	F	Y	R	F	T	P	Q	S	S	H
Query Conservation		.	.																									.	.									.	.	.
Alig confidence		.	.																									.	.									.	.	.
Template Conservation
Template Sequence		E	H	I	E	E	S	R	T	G	W	A	G	G	F	F	V	S	T	P	V	F	S	Y	D	A	I	S	Y	Y	K	I	F	S	D	K	D	G	Y	K	H	I	H	Y	I	K	D	T	V	E	N
Template Known Secondary structure								S	S	S		S	S	S	S	S								T	T	S	S									T	T	S								S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions