Job Description P39382 Confidence 98.47% Date Thu Jan 5 12:00:14 GMT 2012 Rank 117 Aligned Residues 217 % Identity 8% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																													.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.																													.	.	.	.	.	.	.	.	.
Query Sequence		N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	.	.	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	.	.	.	.	.	.	.	.	.	E	R	D	Y	A	I	Y	V	I
Query Conservation																																		.	.																													.	.	.	.	.	.	.	.	.
Alig confidence														.																				.	.																													.	.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		H	D	P	E	A	K	W	I	S	D	T	E	.	F	I	Y	R	E	Q	K	G	T	V	R	L	W	N	V	E	T	N	T	S	T	V	L	I	E	G	K	K	I	E	S	L	R	A	I	R	Y	E	I	S	P	D	R	E	Y	A	L	F	S	Y	N	V	E	P	I	Y	Q	H	S	Y	T	G	Y	Y	V	L	S
Template Known Secondary structure								B	S	S	S	S		.	B					S	S	S					B		G	G	G									T	T	T	T	T	T	T			S						T	T	S	S								S				S	S	S				B
Template Predicted Secondary structure														.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																																																										.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		K	I	P	H	G	D	P	Q	S	L	D	.	.	.	.	.	.	.	P	P	E	V	S	N	A	K	L	Q	Y	A	G	W	G	P	K	G	Q	Q	L	I	F	I	F	E	N	N	I	Y	Y	C	A	H	V	G	K	Q	A	I	R	V	V	S	T	G	K	E	G	V	I	Y	N	G	L	S	D	W	L	Y	E	E
Template Known Secondary structure			S	S	S								.	.	.	.	.	.	.		T	T			S			B	S	B			B		S	S	T	T							T	T						S	S	S	S	S										B	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
				203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.																																		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S
Query Conservation		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	L	K	T	H	I	A	H	W	W	S	P	D	G	T	R	L	A	Y	A	A	I	N	D	S	R	V	P	I	M	E	L	P	T	Y	T	G	S	I	Y	P	T	V	K	P	Y	H	Y	P	K	A	G	S	E	N	P	S	I	S	L	H	V	I	G	L	N	G	P	T	H	D	L	E	M	M	P	P	D	D
Template Known Secondary structure		T	T	S	S	S	S							T	T	S	S										T	T	S									S	S	S	S	S										B	T	T	S												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence		R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	.	.	.	.	E	P	N	R	F	Y	R	F	T	P	Q	S	S
Query Conservation																											.	.	.	.	.
Alig confidence									.	.																	.	.	.	.	.
Template Conservation									.	.
Template Sequence		P	R	M	R	E	Y	Y	.	.	I	T	M	V	K	W	A	T	S	T	K	V	A	V	T	W	L	N	R	A	Q	N	V	S	I	L	T	L	C	D	A	T	T	G
Template Known Secondary structure		G	G	G	S	S			.	.							S	S	S	S									T	T	S										T	T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		376	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions