Job Description P39382 Confidence 98.87% Date Thu Jan 5 12:00:14 GMT 2012 Rank 95 Aligned Residues 231 % Identity 12% Template c1r5mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 Resolution 1.55 Å

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		50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.											.																								.	.	.	.	.	.	.
Query SS confidence										.	.											.																								.	.	.	.	.	.	.
Query Sequence		G	K	E	I	A	G	I	T	.	.	N	N	I	S	S	L	T	W	S	A	.	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	.	.	.	.	.	.	.	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E
Query Conservation										.	.											.																								.	.	.	.	.	.	.
Alig confidence										.	.											.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	I	L	K	E	I	V	K	L	D	N	I	V	S	S	T	W	N	P	L	D	E	S	I	L	A	Y	G	E	K	N	S	V	A	R	L	A	R	I	V	E	T	Y	W	K	L	T	I	I	A	E	L	R	H	P	F	A	L	S	T	N	Q	V	T	C	L	A	W	S	H	D	G	N	S	I	V	T	G	V
Template Known Secondary structure												S			S						S	S		T	T							T	B	T																													B									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	G	E	L	R	L	W	N	K	T	G	A	L	L	N	V	L	N	F	H	R	A	P	I	V	S	V	K	W	N	K	D	G	T	H	I	I	S	M	D	V	E	N	V	T	I	L	W	N	V	I	S	G	T	V	M	Q	H	F	E	L	K	G	S	L	G	V	D	V	E	W	V	D	D	D	K	F	V	I
Template Known Secondary structure		T	T	S							T	T	S											S									T	T	S	S							T	T								T	T	T	T													B	S							T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		200	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	P	K	G	A	I	F	V	Y	Q	I	T	E	K	T	P	T	G	K	L	I	G	H	H	G	P	I	S	V	L	E	F	N	D	T	N	K	L	L	L	S	A	S	D	D	G	T	L	R	I	W	H	G	G	N	G	N	S	Q	N	C	F	Y	G	H	S	Q	S	I	V	S	A	S	W	V	G	D	D	K
Template Known Secondary structure				G	G	G							T	T		S	S		S							S	S									T	T	T	T							T	T	S							S	S	S	B	S		S							S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
																													203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																									.
Template Sequence		V	I	S	C	S	M	D	G	S	V	R	L	W	S	L	K	Q	N	T	L	L	A	L	S	I	V	D	G	V	P	I	F	A	G	R	I	S	Q	D	.	G	Q	K	Y	A	V	A	F	M	D	G	Q	V	N	V	Y	D	L	K	K	L	N	S	P	L	P	I	P	L	Y	A	S	Y	Q	S	S	Q	D	N	D
Template Known Secondary structure							T	T	S							T	T	T	T									T	T										T	T	.	S	S							T	T	S																									T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		Q	A	E	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	E	P	N	R	F	Y	R	F	T
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		Y	I	F	D	L	S	W	N	C	A	G	N	K	I	S	V	A	Y	S	L	Q	E	G	S	V	V	A
Template Known Secondary structure										T	T	S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions