Job Description P39382 Confidence 99.71% Date Thu Jan 5 12:00:14 GMT 2012 Rank 27 Aligned Residues 208 % Identity 7% Template c1ijqA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: crystal structure of the ldl receptor ywtd-egf domain pair Resolution 1.50 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		D	G	K	E	I	A	G	I	T	N	N	I	S	S	L	T	W	S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	.	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I
Query Conservation																																																																.
Alig confidence																																														.	.	.	.															.
Template Conservation																																														.	.	.	.
Template Sequence		E	Y	T	S	L	I	P	N	L	R	N	V	V	A	L	D	T	E	V	A	S	N	R	I	Y	W	S	D	L	S	Q	R	M	I	C	S	T	Q	L	Y	D	T	V	I	.	.	.	.	S	R	D	I	Q	A	P	D	G	L	A	V	D	W	I	H	S	N	I	Y	W	T	D	S	V	L	G	T	V	S	V	A
Template Known Secondary structure									S		S	S								T	T	T	T							T	T	T	T													.	.	.	.		S	S		S									T	T	T	T							T	T	T	T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440					.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L	Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	R	Q	D	H	T	F	W	F	F	K	E	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		D	T	K	G	V	K	R	K	T	L	F	R	E	.	.	.	.	.	.	.	.	.	N	G	S	K	P	R	A	I	V	V	D	P	V	H	G	F	M	Y	W	T	D	W	G	T	P	A	K	I	K	K	G	G	L	N	G	V	D	I	Y	S	L	V	T	E	N	.	.	.	.	.	.	.	.	I	Q	W	P	N
Template Known Secondary structure			T	T	S	S	S								.	.	.	.	.	.	.	.	.	T	T										T	T	T	T								S	S	S								T	T	S									S	S	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.										.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.									.	540	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		G	A	E	F	N	Q	Q	K	N	T	L	L	V	L	S	H	E	S	R	A	L	Q	E	V	T	L	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P	Q	S
Query Conservation																																																																			.
Alig confidence																																									.	.	.	.	.	.												.									.
Template Conservation																																									.	.	.	.	.	.												.
Template Sequence		G	I	T	L	D	L	L	S	G	R	L	Y	W	V	D	S	K	L	H	S	I	S	S	I	D	V	N	G	G	N	R	K	T	I	L	E	D	E	K	.	.	.	.	.	.	R	L	A	H	P	F	S	L	A	V	F	.	E	D	K	V	F	W	T	D	I	I	N	E	A	I	F	S	A	N	R	L	T
Template Known Secondary structure							T	T	T	T							T	T	T	T							T	T	S		S								T	T	.	.	.	.	.	.	T	T	S	S								.	T	T							T	T	T	T							T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.												.
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.							.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions