Job Description P39382 Confidence 99.56% Date Thu Jan 5 12:00:14 GMT 2012 Rank 47 Aligned Residues 201 % Identity 7% Template c1gq1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Resolution 1.40 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	Q	S	N	T	L	F	S	T	I	N	K	P	A	A	I	V	E	M	T	T	N	G	D	F	I	R	T	I	P	L	D	F	V	K	D	L	E	T	I	E	Y	I	G	D	N	Q	F	V	I	S	D	E	R	D	Y	A	I	Y	V	I	S	L	T	P	N	S	E	V	K	I	L	K	K	I	K	I	P	L
Query Conservation
Alig confidence																																			.	.																																						.	.	.	.	.	.	.	.
Template Conservation																																			.	.																																						.	.	.	.	.	.	.	.
Template Sequence		D	L	E	N	L	F	S	V	T	L	R	D	A	G	Q	I	A	L	I	D	G	A	T	Y	E	I	K	S	V	L	D	T	G	.	.	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	R	D	G	K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G							T	T	T	T							T	T	T										S	.	.	S									T	T	S								T	T	S							T	T	S	S	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.												.																					.
Query SS confidence																	.	.	.	.												.																					.
Query Sequence		Q	D	S	P	T	N	C	G	F	E	G	L	A	Y	S	.	.	.	.	R	Q	D	H	T	F	W	F	F	K	E	.	K	N	P	I	E	V	Y	K	V	N	G	L	L	S	S	N	E	L	H	I	.	S	K	D	E	A	L	Q	R	Q	F	T	L	D	D	V	S	G	A	E	F	N	Q	Q	K	N	T	L	L
Query Conservation																	.	.	.	.												.																					.
Alig confidence																	.	.	.	.												.																					.
Template Conservation
Template Sequence		A	E	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I
Template Known Secondary structure								S										S	T	T		T	T	T									T	T							T	T	T														T	T	T					S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																.																																			.						.
Query SS confidence																.																																			.						.
Query Sequence		V	L	S	H	E	S	R	A	L	Q	E	V	T	L	.	V	G	E	V	I	G	E	M	S	L	T	K	G	S	R	G	L	S	H	N	I	K	Q	A	E	G	V	A	M	D	A	S	G	N	.	I	Y	I	V	S	.	E	P	N	R	F	Y	R	F	T	P	Q	S
Query Conservation																.																																			.						.
Alig confidence																.																.	.	.	.	.	.	.	.												.						.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	D	N	L	K	T	T	E	I	S	A	E	R	F	.	.	.	.	.	.	.	.	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R	N	K	L	V	V	I	D	T	K	E
Template Known Secondary structure					T	T	T	T							T	T		S	S	S										T	T	.	.	.	.	.	.	.	.								T	T	S								G	G	G	T							T	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.									.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions