Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP36837
DateThu Jan 5 11:53:54 GMT 2012
Unique Job ID8bc4e76f7e25e2f3

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2xutC_
Top template information
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
Confidence and coverage
Confidence:100.0% Coverage: 92%
448 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQLGFSQEQAFVTFGAFA
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   .........70.........80.........90.........100.........110.........120
Sequence  ALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG
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   .........130.........140.........150.........160.........170.........180
Sequence  LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIALSLAPVIADRFGYSVTYNLCG
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   .........190.........200.........210.........220.........230.........240
Sequence  AGLIIALLVYIACRGMVKDIGSEPDFRPMSFSKLLYVLLGSVVMIFVCAWLMHNVEVANL
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   .........250.........260.........270.........280.........290.........300
Sequence  VLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNV
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   .........310.........320.........330.........340.........350.........360
Sequence  HHEILGFSINPVSFQALNPFWVVLASPILAGIYTHLGNKGKDLSMPMKFTLGMFMCSLGF
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   .........370.........380.........390.........400.........410.........420
Sequence  LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW
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   .........430.........440.........450.........460.........470.........480
Sequence  FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMLLMVPWLK
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   .........
Sequence  RMIATPESH
Secondary structure 





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?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2xut chain C

3D model

Region: 15 - 473
Aligned: 448
Modelled: 459
Confidence: 100.0%
Identity: 17%
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.

Phyre2

PDB 1pw4 chain A

3D model

Region: 2 - 489
Aligned: 414
Modelled: 419
Confidence: 100.0%
Identity: 10%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: Glycerol-3-phosphate transporter

Phyre2

PDB 1pv7 chain A

3D model

Region: 14 - 487
Aligned: 401
Modelled: 402
Confidence: 100.0%
Identity: 13%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: LacY-like proton/sugar symporter

Phyre2

PDB 3o7p chain A

3D model

Region: 17 - 479
Aligned: 408
Modelled: 411
Confidence: 100.0%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)

Phyre2

PDB 2gfp chain A

3D model

Region: 16 - 474
Aligned: 369
Modelled: 372
Confidence: 100.0%
Identity: 10%
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli

Phyre2

PDB 3pro chain C domain 1

3D model

Region: 35 - 79
Aligned: 45
Modelled: 45
Confidence: 10.9%
Identity: 16%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Alpha-lytic protease prodomain
Family: Alpha-lytic protease prodomain

Phyre2

PDB 1jo5 chain A

3D model

Region: 452 - 479
Aligned: 28
Modelled: 28
Confidence: 8.7%
Identity: 18%
Fold: Light-harvesting complex subunits
Superfamily: Light-harvesting complex subunits
Family: Light-harvesting complex subunits

Phyre2

PDB 1wrg chain A

3D model

Region: 452 - 479
Aligned: 28
Modelled: 28
Confidence: 7.2%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum

Phyre2

PDB 1o82 chain A

3D model

Region: 41 - 74
Aligned: 34
Modelled: 34
Confidence: 5.5%
Identity: 12%
Fold: Saposin-like
Superfamily: Bacteriocin AS-48
Family: Bacteriocin AS-48

Phyre2
1

c2xutC_
2

d1pw4a_
3

d1pv7a_
4

c3o7pA_
5

c2gfpA_
6

d3proc1
7

d1jo5a_
8

c1wrgA_
9

d1o82a_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2xutC_



100.0 17 PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
2d1pw4a_



100.0 10 Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
3d1pv7a_



100.0 13 Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
4c3o7pA_



100.0 11 PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
5c2gfpA_



100.0 10 PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
6d3proc1



10.9 16 Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
7d1jo5a_



8.7 18 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
8c1wrgA_



7.2 14 PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
9d1o82a_



5.5 12 Fold:Saposin-like
Superfamily:Bacteriocin AS-48
Family:Bacteriocin AS-48

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0