Job Description P36837 Confidence 100.00% Date Thu Jan 5 11:53:54 GMT 2012 Rank 4 Aligned Residues 408 % Identity 11% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	I	F	F	V	E	L	W	E	R	F	G	Y	Y	G	V	Q	G	V	L	A	V	F	F	V	K	Q	L	G	F	S	Q	E	Q	A	F	V	T	F	G	A	F	A	A	L	V	Y	G	L	I	S	I	G	G	Y	V	G	D	H	L	L	G	T	K	R	T	I	V	L	G	A	L	V	L	A	I	G	Y	F
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	.	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A
Template Known Secondary structure		T	T																													T	T			T	T													T	T											S	.
Template Predicted Secondary structure																																																															.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	G	M	S	L	L	K	P	D	L	I	F	I	A	L	G	T	I	A	V	G	N	G	L	F	K	A	N	P	A	S	L	L	S	K	C	Y	P	P	K	D	P	R	L	D	G	A	F	T	L	F	Y	M	S	I	N	I	G	S	L	I	A	L	S	L	A	P	V	I	A	D	R	F	G	Y	S	V	T	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q
Template Known Secondary structure		T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	C	G	A	G	L	I	I	A	L	L	V	Y	I	A	C	R	G	M	V	K	D	I	G	S	E	P	D	F	R	P	M	S	F	S	K	L	L	Y	V	L	L	G	S	V	V	M	I	F	V	C	A	W	L	M	H	N	V	E	V	A	N	L	V	L	I	V	L	S	I	V	V	T	I	I	F	F	R	Q
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S																	T	T																			S						T	T	T					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	K	L	D	K	T	G	R	N	K	M	F	V	A	F	V	L	M	L	E	A	V	V	F	Y	I	L	Y	A	Q	M	P	T	S	L	N	F	F	A	I	N	N	V	H	H	E	I	L	G	F	S	I	N	P	V	S	F	Q	A	L	N	P	F	W	V	V	L	A	S	P	I	L	A	G	I	Y	T	H	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F
Template Known Secondary structure		.	T	T	S																																											S	T	T																															S
Template Predicted Secondary structure		.
Template SS confidence
			244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	K	G	K	D	L	S	M	P	M	K	F	T	L	G	M	F	M	C	S	L	G	F	L	T	A	A	A	A	G	M	W	F	A	D	A	Q	G	L	T	S	P	W	F	I	V	L	V	Y	L	F	Q	S	L	G	E	L	F	I	S	A	L	G	L	A	M	I	A	A	L	V	P	Q	H	L	M	G	F	I
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Sequence		A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.
Template Known Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																	T	T											S	S		G	G	G					.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	M	W	F	L	T	Q	A	A	A	F	L	L	G	G	Y	V	A	T	F	T	A	V	P	D	N	I	T	D	P	L	E	T	L	P	V	Y	T	N	V	F	G	K	I	G	L	V	T	L	G	V	A	V	V	M	L	L	M	V	P	W	L
Query Conservation
Alig confidence		.																														.	.	.	.	.	.	.	.	.	.
Template Conservation		.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	.	.	.	.	.	.	.	.	.	.	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure		.							G	G	G																	T	S	S	G	.	.	.	.	.	.	.	.	.	.	G	G	G															T	S
Template Predicted Secondary structure		.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
			384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.											.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.