Job Description P0A877 Confidence 97.77% Date Thu Jan 5 11:07:06 GMT 2012 Rank 227 Aligned Residues 223 % Identity 18% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		M	E	R	Y	E	S	L	F	A	Q	L	K	E	R	K	E	G	A	F	V	P	F	V	T	L	G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	.	T	P	A
Query Conservation																																																																														.
Alig confidence																												.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																	.
Template Conservation																												.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		V	T	A	A	T	S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	P	G	V	Y	D	G	.	.	.	.	.	.	.	.	L	S	A	R	V	A	L	S	A	G	F	D	A	L	Y	M	T	.	.	.	.	.	.	.	.	.	G	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N
Template Known Secondary structure														S	T	T										S		.	.	.	.	.	.	.	.								T	T	T		S						.	.	.	.	.	.	.	.	.									T	S	S		S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.									30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.										.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																																.	.	.	.	.	.	.																.	.	.
Query SS confidence																							.	.	.																																.	.	.	.	.	.	.																.	.	.
Query Sequence		Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	L	.	.	.	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	V	.	.	.	.	.	.	.	P	V	E	E	S	A	P	F	R	Q	A	A	L	R	H	.	.	.
Query Conservation																							.	.	.																																.	.	.	.	.	.	.																.	.	.
Alig confidence																							.	.	.								.	.	.																						.	.	.	.	.	.	.																.	.	.
Template Conservation																																	.	.	.
Template Sequence		D	M	R	A	N	A	E	M	I	S	N	I	S	P	S	T	P	V	I	A	D	A	D	T	G	Y	G	G	P	I	M	.	.	.	V	A	R	T	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R
Template Known Secondary structure														S	T	T	S							T	T		S	S	S				.	.	.											T	T									B						B
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
			147	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.														.	.	.	.	.	.	.	.																																															.	.	.
Query SS confidence		.														.	.	.	.	.	.	.	.																																															.	.	.
Query Sequence		.	N	V	A	P	I	F	I	C	P	P	N	A	D	.	.	.	.	.	.	.	.	D	D	L	L	R	Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	.	.	.	A	P	P	L	Q	G	F	G	I
Query Conservation		.														.	.	.	.	.	.	.	.																																															.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	S	D	I	V	V	I	A	R	T	D	S	L	Q	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	G	A	D	V	G	F	L	E	G	I	T	S	.	.	.	.	.	.	.	.	.	.	.	.	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N	M	V	E	H	G
Template Known Secondary structure			T																															T		S					T	T				.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	S		B						T	T	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.													.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		215	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		S	A	P	D	.	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	I	V	K	I	I	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M	K	A	A
Query Conservation						.
Alig confidence						.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	P	S	I	S	A	A	E	A	K	E	M	G	F	R	I	I	I	F	P	F	A	A	L	G	.	.	.	.	.	.	.	.	.	.	P	A	V	A	A	M	R	E	A	M	E	K	L	K	R	D
Template Known Secondary structure		S	S												T		S					T	T	T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.											.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions