Job Description P0A877 Confidence 98.33% Date Thu Jan 5 11:07:06 GMT 2012 Rank 174 Aligned Residues 221 % Identity 18% Template c3eooL_ PDB info PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		M	E	R	Y	E	S	L	F	A	Q	L	K	E	R	K	E	G	A	F	V	P	F	V	T	L	G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	.	T	P	A
Query Conservation																																																																														.
Alig confidence				.																		.	.						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																	.
Template Conservation				.																		.	.						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		I	S	.	A	G	A	K	F	R	A	A	V	A	A	E	Q	P	L	Q	V	.	.	V	G	A	I	T	.	.	.	.	.	.	A	Y	A	A	K	M	A	E	A	V	G	F	K	A	V	Y	L	S	.	.	.	.	.	.	.	.	.	G	G	G	V	A	A	N	S	L	G	I	P	D	L	G	I	S	T	M	D
Template Known Secondary structure				.												S	S	S				.	.				S	S	.	.	.	.	.	.										T	T		S						.	.	.	.	.	.	.	.	.											S		S	S	S
Template Predicted Secondary structure				.																		.	.						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																						.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	.	.	.	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	V	E	E	S	A	P	F	R	Q
Query Conservation																						.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.							.	.	.							.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																.	.	.
Template Sequence		D	V	L	V	D	A	N	R	I	T	N	A	T	.	N	L	P	L	L	V	D	I	D	T	G	W	G	G	A	.	.	.	F	N	I	A	R	T	I	R	S	F	I	K	A	G	V	G	A	V	H	L	E	D	Q	V	G	Q	K	R	C	G	H	R	P	G	K	E	C	V	P	A	G	E	M	V	D	R	I	K
Template Known Secondary structure															.		S							T	T		S	S	S		.	.	.													T	T		S							B						T	T							B
Template Predicted Secondary structure															.																.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.											160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																																		.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																																																		.	.
Query Sequence		A	A	L	R	H	N	V	A	P	I	F	I	C	P	P	N	A	D	.	.	.	.	.	.	.	.	.	.	D	D	L	L	R	Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	.	.	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.																																																		.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	V	D	A	R	T	D	E	T	F	V	I	M	A	R	T	D	A	A	A	A	E	G	I	D	A	A	I	E	R	A	I	A	Y	V	E	A	G	A	D	M	I	F	P	E	A	M	K	T	.	.	.	.	.	.	.	.	.	.	.	.	L	D	D	Y	R	R	F	K	E	A	V	K	V	P	I	L	A	N
Template Known Secondary structure								S		T	T	S																												T		S									S	.	.	.	.	.	.	.	.	.	.	.	.													S		B
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.													.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		Q	G	F	G	I	S	A	P	D	.	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	I	V	K	I	I	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M	K	A	A
Query Conservation											.
Alig confidence											.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	E	F	G	S	T	P	L	F	T	L	D	E	L	K	G	A	N	V	D	I	A	L	Y	C	C	G	A	Y	R	.	.	.	.	.	.	.	.	.	.	A	M	N	K	A	A	L	N	F	Y	E	T	V	R	R	D
Template Known Secondary structure				T	T	S	S	S											T	T								S					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions