Job Description P0A877 Confidence 96.83% Date Thu Jan 5 11:07:06 GMT 2012 Rank 314 Aligned Residues 205 % Identity 14% Template c3dz1A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution Resolution 1.87 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.
Query Sequence		G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	T	.	.	.	.	.	.	.	P	A	Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G
Query Conservation																																																						.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	I	D	D	V	S	I	D	R	L	T	D	F	Y	A	E	V	G	C	E	G	V	T	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	L	G	E	A	P	K	L	D	A	A	E	A	E	A	V	A	T	R	F	I	K	R	A	K	S	X	Q	V	I
Template Known Secondary structure		S		B															T	T		S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	T	G	G	G	S																	T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.																			.	.	.											.	.	.	.	.
Query SS confidence																																.	.	.	.																			.	.	.											.	.	.	.	.
Query Sequence		L	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	.	.	.	.	A	D	V	P	V	E	E	S	A	P	F	R	Q	A	A	L	R	H	.	.	.	N	V	A	P	I	F	I	C	P	P	.	.	.	.	.	N	A	D	D	D	L	L	R	Q	I
Query Conservation																																.	.	.	.																			.	.	.											.	.	.	.	.
Alig confidence												.	.																			.	.	.	.																			.	.	.											.	.	.	.	.
Template Conservation												.	.
Template Sequence		V	G	V	S	A	P	G	F	A	A	.	.	X	R	R	L	A	R	L	S	X	D	A	G	A	A	G	V	X	I	A	P	P	P	S	L	R	T	D	E	Q	I	T	T	Y	F	R	Q	A	T	E	A	I	G	D	D	V	P	W	V	L	Q	D	Y	P	L	T	L	S	V	V	X	T	P	K	V	I	R	Q	I
Template Known Secondary structure							S	S				.	.												T		S								T	T			S																	T	T	S
Template Predicted Secondary structure												.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	I	V	K	I	I	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence														.	.	.	.	.	.																															.																											.	.	.	.	.
Template Conservation														.	.	.	.	.	.																															.
Template Sequence		V	X	D	S	A	S	C	V	X	L	K	H	.	.	.	.	.	.	E	D	W	P	G	L	E	K	I	T	T	L	R	G	F	Q	K	D	G	S	L	R	P	L	S	I	L	C	G	N	.	G	G	L	F	L	D	F	E	X	E	R	G	A	D	G	A	X	T	G	Y	C	F	P	D	X	L	V	D	V	V	K
Template Known Secondary structure						S	S							.	.	.	.	.	.			S	S															T	S	S									G	.	G	G	T	T								T									S
Template Predicted Secondary structure														.	.	.	.	.	.																															.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
					242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		L	S	K	A	G	Q	R	D	L	A	H	N	L	F	D	A	H	L	P	L	I	R	Y	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions