Job Description P0A877 Confidence 94.97% Date Thu Jan 5 11:07:06 GMT 2012 Rank 387 Aligned Residues 210 % Identity 15% Template c3chvA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution Resolution 1.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	T	P	A	Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	L	M	Y	A	N	L	V	F	N
Query Conservation
Alig confidence																									.	.					.	.			.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																									.	.					.	.			.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence		T	V	S	E	Q	V	E	S	T	Q	E	A	F	E	A	G	A	A	I	A	H	C	H	.	.	V	R	N	D	.	.	D	G	.	.	.	.	.	.	.	.	.	.	.	T	P	S	S	D	P	D	R	F	A	R	L	T	E	G	L	H	T	H	C	P	G	X	I	V	Q	F	S	T	G	.	.	G	R	S	G
Template Known Secondary structure		S															T								.	.				T	.	.	T	S	.	.	.	.	.	.	.	.	.	.	.																				S	T	T									.	.	T	T	T
Template Predicted Secondary structure																									.	.					.	.			.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.			.	.												60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																																									.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.																																									.	.
Query Sequence		K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	V	.	.	.	.	.	.	.	.	.	P	V	E	E	S	A	P	F	R	Q	A	A	L	R	H	N	V	A	P	I	F	I	C	P	P	N	A	D	D	D	L	L	R	Q	I	A	S	Y	G	R	.	.	G	Y	T	Y	L	L
Query Conservation																									.	.	.	.	.	.	.	.	.																																									.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation
Template Sequence		A	G	Q	A	R	G	G	X	L	P	L	K	P	D	X	A	S	L	S	V	G	S	N	N	F	P	S	R	V	Y	E	N	P	P	D	L	V	D	W	L	A	A	Q	X	R	S	Y	R	V	T	P	E	I	E	A	F	D	L	S	H	I	L	R	A	I	D	X	H	G	R	G	L	L	Y	G	K	L	Y	V	Q
Template Known Secondary structure			G	G	G	G	G	T	T	G	G	G			S							S					S	S	S																				T								S	S													T	T		S		S	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.
Predicted Secondary structure																													.				.																																						.	.	.	.	.	.	.	.
Query SS confidence																													.				.																																						.	.	.	.	.	.	.	.
Query Sequence		S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	.	A	A	P	.	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	I	V	K	I	I	E	Q	H	.	.	.	.	.	.	.	.	I	N	E
Query Conservation																													.				.																																						.	.	.	.	.	.	.	.
Alig confidence																													.				.																							.					.	.	.	.	.	.					.	.	.	.	.	.	.	.
Template Conservation																																																								.					.	.	.	.	.	.
Template Sequence		F	V	X	G	V	K	N	A	X	P	A	D	R	E	V	F	D	F	Y	V	R	X	X	R	T	R	A	P	Q	A	E	W	C	A	A	G	I	G	A	N	Q	L	T	V	N	E	W	A	I	A	A	G	G	H	.	T	R	T	G	.	.	.	.	.	.	L	E	D	N	I	R	L	D	R	Q	T	L	A	P	S
Template Known Secondary structure							T	T	S																				T	T	S								T	T												T	T			.				S	.	.	.	.	.	.	T	T	T			B	S	S	S	S		B
Template Predicted Secondary structure																																																								.					.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	A	L	V	R	R	S	V	E	L	C	D	K	Y
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions