Job Description P0A877 Confidence 96.47% Date Thu Jan 5 11:07:06 GMT 2012 Rank 334 Aligned Residues 197 % Identity 18% Template c3b4uB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 Resolution 1.20 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.																.
Query SS confidence																																																						.	.	.	.	.	.	.																.
Query Sequence		G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	T	.	.	.	.	.	.	.	P	A	Q	C	F	E	M	L	A	L	I	R	Q	K	H	.	P	T	I	P	I
Query Conservation																																																						.	.	.	.	.	.	.																.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.																.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	V	D	I	D	A	M	I	A	H	A	R	R	C	L	S	N	G	C	D	S	V	T	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	G	E	G	C	S	V	G	S	R	E	R	Q	A	I	L	S	S	F	I	A	A	G	I	A	P	S	R	I
Template Known Secondary structure		S	S	B															T	T		S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	T	T	G	G	G	S		T	T												T	T			G	G	G
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																								.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.
Predicted Secondary structure																																	.	.			.	.	.	.																	.	.	.	.											.	.	.	.	.
Query SS confidence																																	.	.			.	.	.	.																	.	.	.	.											.	.	.	.	.
Query Sequence		G	L	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	.	.	A	D	.	.	.	.	V	P	V	E	E	S	A	P	F	R	Q	A	A	L	R	H	.	.	.	.	N	V	A	P	I	F	I	C	P	P	.	.	.	.	.	N	A	D	D	D	L
Query Conservation																																	.	.			.	.	.	.																	.	.	.	.											.	.	.	.	.
Alig confidence													.	.																			.	.			.	.	.	.																	.	.	.	.											.	.	.	.	.
Template Conservation													.	.
Template Sequence		V	T	G	V	L	V	D	S	I	E	D	.	.	A	A	D	Q	S	A	E	A	L	N	A	G	A	R	N	I	L	L	A	P	P	S	Y	F	K	N	V	S	D	D	G	L	F	A	W	F	S	A	V	F	S	K	I	G	K	D	A	R	D	I	L	V	Y	N	I	P	S	V	T	M	V	T	L	S	V	E	L
Template Known Secondary structure								S	S				.	.											T	T		S									S	S		S																			T	T														S
Template Predicted Secondary structure													.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		L	R	Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	.	.	.	.	.	I
Query Conservation																																																																												.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																												.	.	.	.																						.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		V	G	R	L	K	A	A	F	P	G	I	V	T	.	.	.	.	.	.	.	.	.	G	V	K	D	S	S	G	N	W	S	H	T	E	R	L	L	K	E	H	G	D	L	A	I	L	I	G	.	.	.	.	D	E	R	D	L	A	R	G	V	R	L	G	G	Q	G	A	I	S	G	V	A	N	F	L	T	Q	E
Template Known Secondary structure										T	T	T			.	.	.	.	.	.	.	.	.						S														T	T	S						.	.	.	.											T	T							S	G	G	G	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.										.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	I	I	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	A	M	A	V	D	G	K	D	D	P	R	I	V	D	L	V	V	E	L	L	K
Template Known Secondary structure							T	T														G	G	G
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions