Job Description P0A877 Confidence 97.65% Date Thu Jan 5 11:07:06 GMT 2012 Rank 244 Aligned Residues 213 % Identity 17% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		G	A	F	V	P	F	V	T	L	G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	T	.	.	.	.	.	.	.	P	A	Q	C	F	E	M	L	A	L	I	R
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	I	I	T	P	F	K	N	K	E	V	D	F	D	G	L	E	E	N	I	N	F	L	I	E	N	G	V	S	G	I	V	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	G	E	S	P	T	L	S	H	E	E	H	K	K	V	I	E	K	V	V
Template Known Secondary structure			B							T	T																	T	T		S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	T	T	G	G	G	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																								.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.						.
Predicted Secondary structure																																											.	.	.	.	.														.															.	.	.	.	.
Query SS confidence																																											.	.	.	.	.														.															.	.	.	.	.
Query Sequence		Q	K	H	P	T	I	P	I	G	L	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	.	.	.	.	.	V	P	V	E	E	S	A	P	F	R	Q	A	A	.	L	R	H	N	V	A	P	I	F	I	C	P	P	N	.	.	.	.	.	A
Query Conservation																																											.	.	.	.	.														.															.	.	.	.	.
Alig confidence																										.																	.	.	.	.	.														.															.	.	.	.	.
Template Conservation																										.
Template Sequence		D	V	V	N	G	R	V	Q	V	I	A	G	A	G	S	N	C	T	E	E	A	I	E	L	.	S	V	F	A	E	D	V	G	A	D	A	V	L	S	I	T	P	Y	Y	N	K	P	T	Q	E	G	L	R	K	H	F	G	K	V	A	E	S	I	N	L	P	I	V	L	Y	N	V	P	S	R	T	A	V	N	L
Template Known Secondary structure					T	T	S	S									S	S								.								T		S									S	S																			S	S												S
Template Predicted Secondary structure																										.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	D	D	L	L	R	Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	.	.
Query Conservation																																																																																.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																						.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Sequence		E	P	K	T	V	K	L	L	A	E	E	Y	S	N	I	S	A	V	K	E	A	N	P	N	.	.	.	.	.	.	.	.	.	.	.	L	S	Q	V	S	E	L	I	H	D	A	K	I	T	V	L	S	G	.	.	.	.	N	D	E	L	T	L	P	I	I	A	L	G	G	K	G	V	I	S	V	V	A	N	I
Template Known Secondary structure														T	T									S		.	.	.	.	.	.	.	.	.	.	.											T							S	.	.	.	.	S	G	G	G								T							S	G	G	G	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.												.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
						237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	I	V	K	I	I	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M	K	A	A	T	R	S
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		V	P	K	E	F	V	E	M	V	N	Y	A	L	E	G	D	F	E	K	A	R	E	I	H	Y	K	L	F	P	L	M	K	A	M	F	I
Template Known Secondary structure																T																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions