Job Description P0A877 Confidence 95.90% Date Thu Jan 5 11:07:06 GMT 2012 Rank 356 Aligned Residues 218 % Identity 17% Template c2vc6A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of mosa from s. meliloti with pyruvate bound Resolution 1.95 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																														.	.																		.
Query SS confidence																																																														.	.																		.
Query Sequence		G	A	F	V	P	F	V	T	L	G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	.	.	T	P	A	Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	.
Query Conservation																																																														.	.																		.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.																		.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	L	V	T	P	F	A	D	D	R	I	D	E	V	A	L	H	D	L	V	E	W	Q	I	E	E	G	S	F	G	L	V	P	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	G	E	S	P	T	L	S	K	S	E	H	E	Q	V	V	E	I	T	I	K	T	A	N	G
Template Known Secondary structure										T	T																	T	T		S				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	G	T	G	G	G	S																	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130				.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.
Predicted Secondary structure																																					.	.			.	.	.														.														.	.	.	.	.
Query SS confidence																																					.	.			.	.	.														.														.	.	.	.	.
Query Sequence		T	I	P	I	G	L	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	.	.	A	D	.	.	.	V	P	V	E	E	S	A	P	F	R	Q	A	A	.	L	R	H	N	V	A	P	I	F	I	C	P	P	.	.	.	.	.	N	A	D	D	D	L
Query Conservation																																					.	.			.	.	.														.														.	.	.	.	.
Alig confidence															.	.																					.	.			.	.	.														.														.	.	.	.	.
Template Conservation															.	.
Template Sequence		R	V	P	V	I	A	G	A	G	S	N	S	T	.	.	A	E	A	I	A	F	V	R	H	A	Q	N	A	G	A	D	G	V	L	I	V	S	P	Y	Y	N	K	P	T	Q	E	G	I	Y	Q	H	F	K	A	I	D	A	A	S	T	I	P	I	I	V	Y	N	I	P	G	R	S	A	I	E	I	H	V	E	T
Template Known Secondary structure		S	S		B							S	S		.	.													T	T		S									S	S																			S	S												S
Template Predicted Secondary structure															.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		L	R	Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																										.	.	.	.																						.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		L	A	R	I	F	E	D	C	P	N	V	K	G	V	.	.	.	.	.	.	.	.	.	.	D	A	T	G	N	L	L	R	P	S	L	E	R	M	A	C	G	E	D	F	N	L	L	T	G	.	.	.	.	E	D	G	T	A	L	G	Y	M	A	H	G	G	H	G	C	I	S	V	T	A	N	V	A	P	A	L
Template Known Secondary structure										T	T					.	.	.	.	.	.	.	.	.	.			S			T										S		T	T	S	B				S	.	.	.	.		G	G	G							T	T							S	G	G	G	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160											.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	K	I	I	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M	K	A	A	T	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	A	D	F	Q	Q	A	C	L	N	G	D	F	A	A	A	L	K	L	Q	D	R	L	M	P	L	H	R	A	L	F	L
Template Known Secondary structure											T	T																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions