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Job DescriptionP0A877
Confidence96.76%DateThu Jan 5 11:07:06 GMT 2012
Rank317Aligned Residues212
% Identity16%Templatec2v9dB_
PDB info PDB header:lyaseChain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70...... ...80.........90... ......100..
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Query Sequence  GDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNATLRAFAAGV. . TPAQCFEMLALIRQKHP. TIPIGLLMY
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Template Sequence  GQLDKPGTAALIDDLIKAGVDGLFFL. . . . . . . . . . . . . . . . . . GSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG
Template Known Secondary structure  SSB
TT
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   2930.........40.........50.... .....60.........70.........80.........90
 
   103......110.........120........ .130. ........140... ......150....... ..160.........170.
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Query Sequence  ANLVFNKGIDEFYAQCEKVGVDSVLV. ADV. . . . PVEESAPFRQAA. LRHNVAPIFICPPN. . . . . ADDDLLRQIASYGR
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Template Sequence  GTNA. . RETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVXLYNFPALTGQDLTPALVKTLADSRS
Template Known Secondary structure  SS
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   91... .....100.........110.........120.........130.........140.........150.........160........
 
   172.......180.........190.........200.........210.........220.........230...... ...240.....
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Query Sequence  GYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSA. . . . . . IVKIIEQHI
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Template Sequence  NIIGIKDTIDS. . . . . . . VAHLRSXIHTVKGAHPHFTVLCG. . . YDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWR
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TT
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GGGTT
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   169170......... 180.........190.........200.. .......210.........220.........230........
 
   246...250.........260.......
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Query Sequence  NEPEKMLAALKVFVQPMKAATR
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Template Sequence  DGDVAKAAGYHQTLLQIPQXYQ
Template Known Secondary structure  TT
GGGGGG
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   239240.........250.........260
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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