Job Description P0A877 Confidence 89.55% Date Thu Jan 5 11:07:06 GMT 2012 Rank 470 Aligned Residues 187 % Identity 13% Template c2otdC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: the crystal structure of the glycerophosphodiester phosphodiesterase2 from shigella flexneri 2a Resolution 2.60 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.										.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.													.	.	.	.	.	80	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	.	.	.	.	.	.	.	.	.	P	F	S	D	P	L	A	D	G	P	.	.	.	.	.	T	I	Q	N	A	T	L	R	A	F	A	A	.	.	.	.	.	.	.	.	.	.	.	.	G	V	T	P	A	Q	C	F	E
Query Conservation																									.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	N	T	L	A	A	I	D	V	G	A	K	Y	G	H	K	X	I	E	F	D	A	K	L	S	K	D	G	E	I	F	L	L	H	D	D	N	L	E	R	T	S	N	G	W	G	V	A	G	E	L	N	W	Q	D	L	L	R	V	D	A	G	S	W	Y	S	K	A	F	K	G	E	P	L	P	L	L	S	Q
Template Known Secondary structure			S	S	S										T	T		S										T	T							S	S	S	B	S	G	G	G	S	S			S	B	G	G	G	S						T	T			S	S	T	T	T		T	T		T	T					B
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	.	.	V	G	V	D	S	V	L	V	A	D	V	P	V	E	E	S	A	P	F	R	Q	A	A	L	R	H	N	V	A	P	I	F	I	C	P	P	N	A	D	D	D
Query Conservation																																							.	.
Alig confidence														.																									.	.															.	.	.	.
Template Conservation														.																																									.	.	.	.
Template Sequence		V	A	E	R	C	R	E	H	G	X	X	A	.	N	I	E	I	K	P	T	T	G	T	G	P	L	T	G	K	X	V	A	L	A	A	R	Q	L	W	A	G	X	T	P	P	L	L	S	S	F	E	I	D	.	.	.	.	A	L	E	A	A	Q	Q	A	A	P	E	L	P	R	G	L	L	L	D	E	W	R	D
Template Known Secondary structure										T				.								T	T																	T	T	T	S								S				.	.	.	.										T	T	S							S	S			T
Template Predicted Secondary structure														.																																									.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.											.								.
Template Conservation																								.	.	.	.	.	.	.	.	.	.											.								.
Template Sequence		D	W	R	E	L	T	A	R	L	G	C	V	S	I	H	L	N	H	K	L	L	D	.	.	.	.	.	.	.	.	.	.	K	A	R	V	X	Q	L	K	D	A	.	G	L	R	I	L	V	Y	.	T	V	N	K	P	Q	H	A	A	E	L	L	R	W	G	V	D	C	I	C	T
Template Known Secondary structure		T									T		S						G	G	G			.	.	.	.	.	.	.	.	.	.										T	.	T							.															T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.											.								.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.											.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions