|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | R | Y | E | S | L | F | A | Q | L | K | E | R | K | E | G | A | F | V | P | F | V | T | L | G | D | P | G | I | E | Q | S | L | K | I | I | D | T | L | I | E | A | G | A | D | A | L | E | L | G | I | P | F | S | D | P | L | A | D | G | P | T | I | Q | N | A | T | L | R | A | F | A | A | G | V | T | P | A | Q | C |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
Template Conservation |   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |
|
|   |   | . | . |
|
| . | . | . | . | . | . |   |   |   |
|
|   |
|
|   |
|   |
|
|
|
|   |
|
|   |   |   |   | . | . | . | . | . | . |
|   |   |
Template Sequence |   |
S | A | A | A | A | A | V | E | A | A | R | G | A | G | W | T | G | H | V | A | G | T | R | K | T | T | P | G | F | R | L | V | E | K | Y | G | L | L | V | . |
. |
G | G | . |
. |
. |
. |
. |
. |
A | A | S | H | R | Y | D | L | G | G | L | V | M | V | K | D | N | H | V | V | A | A | . |
. |
. |
. |
. |
. |
G | G | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |
|
| S |
|
|
| T | T |
|  |  |  |  |  |  |  |  |  |  | . | . | T | T | . | . | . | . | . | . |
| B |
|
|
|
| S | T | T | S | S |  |  |  |
|  |  |  |  |  |  |  | . | . | . | . | . | . | T | S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . |
|
| . | . | . | . | . | . |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | |
|
. | . | |
|
|
|
|
|
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | |
|
|
|
|
|
. | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | |
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | M | L | A | L | I | R | Q | K | H | P | . |
T | I | P | I | G | L | L | M | Y | A | N | L | V | F | N | K | G | I | D | E | F | Y | A | Q | C | E | K | V | G | V | D | S | V | L | V | A | D | V | P | V | E | E | S | A | P | F | R | Q | A | A | L | R | H | N | V | A | P | I | F | I | C | P | P | N | A | D | D |
Query Conservation |   |
  |   |   |
|   |   |
|
|   |   |   |   | . |   |   |
|
|
|
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |
| . | . | . | . | . | . | . |
|
|
| . |
|   |   |
|   |   |   |
|
|
|   |
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
E | K | A | V | R | A | A | R | Q | A | A | D | F | A | L | K | V | E | V | E | C | S | S | . |
. |
. |
. |
. |
. |
. |
L | Q | E | . |
A | V | Q | A | A | E | A | G | A | D | L | V | L | L | D | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  | S | S | . | . | . | . | . | . | . |  |  |  | . |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |  |  |  | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
184 | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | |
. | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | L | R | Q | I | A | S | Y | G | R | G | Y | T | Y | L | L | S | R | A | G | V | T | G | A | E | N | R | A | A | L | P | L | N | H | L | V | A | K | L | K | E | Y | N | . |
A | A | P | P | L | Q | G | F | G | I | S | A | P | D | Q | V | K | A | A | I | D | A | G | A | A | G | A | I | S | G | S | A | I |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   | . |   |   |
|
|   |
|
|
|
|
|   |
|   |
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|
|
|
|
| . |   |   |   |
|
|   |   |   |   |   |   |
|
|
|   |
|   |
|
|
|
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | K | P | E | E | L | H | P | T | A | T | V | L | K | A | Q | F | P | S | V | A | V | E | A | S | G | G | I | . |
T | L | D | N | L | P | Q | F | C | G | P | H | I | D | V | I | S | M | G | M | L | T |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  | S | S |
| . |
| T | T | T |  |  |  |  |
|
| T | T |
|
|  |  |  |
| T |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
226 | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | |
. | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
  |