Job Description P0A877 Confidence 94.41% Date Thu Jan 5 11:07:06 GMT 2012 Rank 401 Aligned Residues 210 % Identity 16% Template c2hmcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	.	.	T	P	A	Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	L	M	Y	A
Query Conservation																																																					.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.															.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		R	T	P	D	F	D	A	L	V	R	K	G	K	E	L	I	A	D	G	X	S	A	V	V	Y	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	X	G	D	W	P	L	L	T	D	E	Q	R	X	E	G	V	E	R	L	V	K	.	.	A	G	I	P	V	I	V	G	T	G	A
Template Known Secondary structure		S	S	B															T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	G	T	G	G	G	S															.	.	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																.	.	.	.	.	.											.	.											.	.	.	.
Query SS confidence																																.	.	.	.	.	.											.	.											.	.	.	.
Query Sequence		N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	V	P	V	.	.	.	.	.	.	E	E	S	A	P	F	R	Q	A	A	.	.	L	R	H	N	V	A	P	I	F	I	.	.	.	.	C	P	P	N	A	D	D	D	L	L	R	Q	I	A	S	Y	G	R
Query Conservation																																.	.	.	.	.	.											.	.											.	.	.	.
Alig confidence							.	.																								.	.	.	.	.	.											.	.											.	.	.	.
Template Conservation							.	.
Template Sequence		V	N	T	A	S	.	.	A	V	A	H	A	V	H	A	Q	K	V	G	A	K	G	L	X	V	I	P	R	V	L	S	R	G	S	V	I	A	A	Q	K	A	H	F	K	A	I	L	S	A	A	P	E	I	P	A	V	I	Y	N	S	P	Y	Y	G	F	A	T	R	A	D	L	F	F	A	L	R	A	E	H	K
Template Known Secondary structure		S	S				.	.												T		S									S	S	S	T	T																S	T	T	S							B	G	G	G	T	B															T
Template Predicted Secondary structure							.	.
Template SS confidence
		81	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.										.	.	.	240	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.
Query Sequence		G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	.	.	.	.	.	.	.	.	.	I	V	K	I	I	E
Query Conservation																																																																			.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																												.			.																						.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.																												.			.
Template Sequence		N	L	V	G	F	.	.	.	.	.	.	.	.	K	E	F	G	G	P	A	D	X	R	Y	A	A	E	N	I	T	S	R	D	D	E	V	T	L	X	I	.	G	V	.	D	T	A	V	V	H	G	F	V	N	C	G	A	T	G	A	I	T	G	I	G	N	V	L	P	K	E	V	I	H	L	C	K	L	S	Q
Template Known Secondary structure		T					.	.	.	.	.	.	.	.				S												T	S		S	S	S	S						.		S	.	G	G	G								S								S	G	G	G	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																												.			.
Template SS confidence
		159	160	.	.	.									.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M	K	A	A	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	A	K	G	D	A	D	A	R	A	R	A	L	E	L	E	Q	A	L	A	V	L	S	S
Template Known Secondary structure				T	T	T															T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions