Job Description P0A877 Confidence 99.57% Date Thu Jan 5 11:07:06 GMT 2012 Rank 55 Aligned Residues 214 % Identity 19% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		S	L	F	A	Q	L	K	E	R	K	.	E	G	A	F	V	P	F	V	T	L	G	D	P	G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	T	P	A	Q	C	F	E	M
Query Conservation												.
Alig confidence												.													.																								.	.												.	.	.	.	.
Template Conservation																									.																								.	.												.	.	.	.	.
Template Sequence		Q	S	V	T	E	L	K	A	D	F	P	D	N	I	V	I	A	S	I	M	C	S	Y	.	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	.	.	L	S	C	P	H	G	M	G	E	R	G	.	.	.	.	.	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I
Template Known Secondary structure												T	T	S										S	.															T	T		S						.	.					S	S	G	G	G	G	T	.	.	.	.	.		T
Template Predicted Secondary structure																									.																								.	.												.	.	.	.	.
Template SS confidence
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.			.	670	.	.	.	.	.	.	.	.	.						680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	L	M	Y	A	N	L	V	F	N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	V	P	V	E	E	S	A	P	F	R	Q	A	A	L	R	H	N	V	A	P	I	F	I	C	P	P	N	A	D	D	D	L	L	R
Query Conservation
Alig confidence										.													.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.													.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	R	W	V	R	Q	A	V	.	Q	I	P	F	F	A	K	L	T	P	N	V	.	.	.	T	D	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A
Template Known Secondary structure										.	S	S								S		S	.	.	.	S													T		S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									B		T	T	S		B	S	S
Template Predicted Secondary structure										.													.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		695	.	.	.	.	700	.	.		.	.	.	.	.	.	.	710	.	.	.	.				.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.																		.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		Q	I	A	S	Y	G	R	G	Y	T	Y	L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	Y	N	.	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	A	G	A	A	G	A	I	S	G	S	A	I	V	K	I	I	E	Q
Query Conservation																																										.
Alig confidence														.	.	.	.	.	.	.	.																					.																																				.	.	.
Template Conservation														.	.	.	.	.	.	.	.																																																									.	.	.
Template Sequence		V	G	A	G	K	R	T	T	Y	G	G	V	.	.	.	.	.	.	.	.	S	G	T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	.	.	.	Q
Template Known Secondary structure		B	T	T	T	T	B							.	.	.	.	.	.	.	.		S	G	G	G															S	T	T							S	S			S										T	T		S					S					T	.	.	.	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																																																									.	.	.
Template SS confidence
		754	.	.	.	.	.	760	.	.	.	.	.									.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.				.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	T	V	I	Q	D	Y	C	T	G	L	K	A	L	L
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		823	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions