Job Description P0A877 Confidence 88.12% Date Thu Jan 5 11:07:06 GMT 2012 Rank 494 Aligned Residues 215 % Identity 15% Template c1bwvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:protein (ribulose bisphosphate carboxylase); PDBTitle: activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco)2 complexed with the reaction intermediate analogue 2-carboxyarabinitol3 1,5-bisphosphate Resolution 2.40 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		G	I	E	Q	S	L	K	I	I	D	T	L	I	E	A	G	A	D	A	L	E	L	G	I	P	F	S	D	P	L	A	D	G	P	T	I	Q	N	A	T	L	R	A	F	A	A	G	V	T	P	A	Q	C	F	E	M	L	A	L	I	R	Q	K	H	P	T	I	P	I	G	L	L	M	Y	A	.	N	L	V	F
Query Conservation																																																																													.
Alig confidence																							.	.	.	.	.									.									.	.	.	.	.	.	.																										.
Template Conservation																							.	.	.	.	.									.									.	.	.	.	.	.	.
Template Sequence		S	G	K	N	Y	G	R	V	V	Y	E	A	L	K	G	G	L	D	F	V	D	.	.	.	.	.	D	E	N	I	N	S	Q	P	.	F	M	R	W	R	E	R	Y	.	.	.	.	.	.	.	L	F	T	M	E	A	V	N	K	A	S	A	A	T	G	E	V	K	G	H	Y	L	N	V	T	A	A	T	M	E
Template Known Secondary structure																	T		S	B			.	.	.	.	.		T	T		S	S	B	T	.	T	B							.	.	.	.	.	.	.															T	S			B								S	S
Template Predicted Secondary structure																							.	.	.	.	.									.									.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.								.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																												.	.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	G	I	D	E	F	Y	A	Q	C	E	K	V	G	V	D	S	V	L	V	A	D	V	P	V	.	.	E	E	S	A	P	F	R	Q	A	A	L	R	H	N	V	A	P	I	F	I	C	P	P	N	.	.	.	.	.	.	.	.	.	.	A	D	D	D	L	L	R	Q	I	A	S	Y	G	R	G	Y	T	Y
Query Conservation																												.	.																									.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																			.					.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																			.
Template Sequence		E	.	.	M	Y	A	R	A	N	F	A	K	E	L	G	S	V	I	I	M	I	.	D	L	V	I	G	Y	T	A	I	Q	T	M	A	K	W	A	R	D	N	D	M	I	L	H	L	H	R	A	G	N	S	T	Y	S	R	Q	K	N	H	G	M	N	F	R	V	I	C	K	W	M	R	M	A	G	V	D	H	I
Template Known Secondary structure			.	.											T	T		S					.		G	G	G															T	T								T	T	T					S		T	T	S															T		S
Template Predicted Secondary structure			.	.																			.
Template SS confidence
		249			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		L	L	S	R	A	G	V	T	G	A	E	N	R	A	A	L	P	L	N	H	L	V	A	K	L	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	A	A	P	P	L	Q	G	F	G	I	S	A	P	D	Q	V	K	A	A	I	D	.	A	G	A	A	G	A	I	S	G
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.			.											.
Template Conservation								.	.																																																	.			.
Template Sequence		H	A	G	T	V	V	.	.	G	K	L	E	G	D	P	I	I	T	R	G	F	Y	K	T	L	L	L	P	K	L	E	R	N	L	Q	E	G	L	F	F	D	M	E	W	A	S	L	R	K	V	M	P	V	A	S	G	.	G	I	.	H	A	G	Q	M	H	Q	L	I	H	Y	L	G	E	D	V	V	L	Q	F
Template Known Secondary structure						S	S	.	.	S	S	S																	S					B	T	T	T	T	B		S					T	T										S	.	S		.		T	T	S										S	S
Template Predicted Secondary structure								.	.																																																	.			.
Template SS confidence
		327	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	V	K	I	I	E	Q	H	I	N	E	P	E	K	M	L	A	A	L	K	V	F	V	Q	P	M	K	A	A	T
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		G	G	G	T	I	.	.	.	G	H	P	D	G	I	Q	A	G	A	T	A	N	R	V	A	L	E	A	M	I	L	A	R
Template Known Secondary structure		S					.	.	.	T		T	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		403	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions