 |
Job Description | P0ABX8 | Confidence | 1.68% | Date | Thu Jan 5 11:16:40 GMT 2012 |
Rank | 58 | Aligned Residues | 60 |
% Identity | 20% | Template | c3fozB_ |
PDB info |
PDB header:transferase/rna | Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; |
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
|
Resolution | 2.50 Å |
|
 |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | |
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | E | A | T | R | S | R | L | S | E | Y | L | P | E | . |
. |
V | R | S | R | L | L | L | L | F | S | R | Q | D | A | A | V | L | A | T | E | E | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | K | N | L | I | A | E | I | K | T | T | L | S | T | P | L | V | A | G | Q | P | K | Q | D | V | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . |
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
Template Conservation |   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
|
| . | . | . | . |   |
|
Template Sequence |   |
D | P | V | A | A | A | R | I | H | P | N | D | P | Q | R | L | S | R | A | L | E | V | F | F | I | S | G | K | T | L | T | E | L | T | Q | T | S | G | D | A | L | P | Y | Q | V | H | Q | F | A | I | A | P | A | S | R | E | L | L | H | Q | R | I | E | Q | R | F | H | Q | M | L | A | S | G | F | . |
. |
. |
. |
E | A |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|  |  |  |  | T | T | S |
|
|
|
|
| S | S |  |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |  | . | . | . | . |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
|
|
|
. | . |
  |
  |   |
145 | . |
Predicted Secondary structure |   |
 |  |
Query SS confidence |   |
|
|
Query Sequence |   |
D | V |
Query Conservation |   |
  |
|
Alig confidence |   |
|
|
Template Conservation |   |
|
|
Template Sequence |   |
E | V |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
229 | 230 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|