Job Description P64557 Confidence 100.00% Date Thu Jan 5 12:09:25 GMT 2012 Rank 3 Aligned Residues 256 % Identity 24% Template c3hrdC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

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		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure					.																					.												.	.																			.
Query SS confidence					.																					.												.	.																			.
Query Sequence		M	I	E	.	Q	F	F	R	P	D	S	V	E	Q	A	L	E	L	K	R	R	Y	Q	D	.	E	A	V	W	F	A	G	G	S	K	L	.	.	N	A	T	P	T	R	T	D	K	K	I	A	I	S	L	Q	D	L	.	E	L	D	W	V	D	W	D	N	G	A	L	R	I	G	A	M	S	R	L	Q	P	L
Query Conservation					.																					.												.	.																			.
Alig confidence					.																					.												.	.																			.
Template Conservation
Template Sequence		M	K	D	F	E	F	F	A	P	K	T	L	E	E	A	K	G	L	L	H	Q	Y	K	D	V	P	P	A	I	I	A	G	G	T	D	L	V	I	E	I	N	D	R	W	E	K	P	D	V	V	I	D	I	K	K	L	K	E	L	E	Y	I	R	V	E	E	N	T	I	H	I	G	A	L	S	T	F	T	Q	I
Template Known Secondary structure											S	S											T	T	T	S						S	S		T	T							T	T	S				S						T	T		G	G	G							S	S						T	T		B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		76	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure									.	.	.																																																.	.	.																	.	.	.	.
Query SS confidence									.	.	.																																																.	.	.																	.	.	.	.
Query Sequence		R	D	A	R	F	I	P	.	.	.	A	A	L	R	E	A	L	G	F	V	Y	S	R	H	V	R	N	Q	S	T	I	G	G	E	I	A	A	R	Q	E	E	S	V	L	L	P	V	L	L	A	L	D	A	E	L	V	F	.	.	.	G	N	G	E	T	L	S	I	E	D	Y	L	A	C	P	C	.	.	.	.
Query Conservation									.	.	.																																																.	.	.																	.	.	.	.
Alig confidence									.	.	.																																																.	.	.																	.	.	.	.
Template Conservation
Template Sequence		E	N	H	P	F	I	R	S	H	V	R	A	L	Y	K	A	A	S	Q	V	G	S	P	Q	I	R	N	L	G	T	I	G	G	N	L	S	T	S	S	V	A	G	D	G	V	S	A	M	T	T	L	D	A	T	V	V	L	E	S	V	R	G	T	R	Q	M	K	L	T	D	F	F	D	G	E	G	F	K	R	R
Template Known Secondary structure																				T	S	S									B								T		T	T										T	T								T	T															S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
							146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.																	.	.	.																											.	.	.	.	.
Query SS confidence		.	.	.	.	.																	.	.	.																											.	.	.	.	.
Query Sequence		.	.	.	.	.	D	R	L	L	T	E	I	I	I	K	D	P	Y	R	T	C	.	.	.	A	T	R	K	I	S	R	S	Q	A	G	L	T	V	V	T	A	A	V	A	M	T	D	H	D	G	.	.	.	.	.	M	R	I	A	L	D	G	V	A	S	K	A	L	R	L	H	D	V	E	K	Q	N	L	E	G
Query Conservation		.	.	.	.	.																	.	.	.																											.	.	.	.	.
Alig confidence		.	.	.	.	.																	.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		N	A	L	E	A	D	E	I	M	T	E	V	I	I	D	R	P	D	A	H	S	A	S	A	F	Y	K	L	A	K	R	K	S	L	A	I	S	V	I	G	G	G	M	A	V	K	V	D	D	A	G	V	C	T	W	A	S	M	R	G	G	C	I	G	R	Y	P	L	H	F	K	Q	A	E	E	M	L	V	G	A
Template Known Secondary structure		S	S			T	T													T	T										S	S	S	S	S				S											T	T	T											T	S	S	S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		213	.	.	.								.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.
Query Sequence		N	A	L	E	.	.	.	.	.	.	.	Q	A	V	A	N	A	I	F	P	Q	E	D	L	R	G	S	V	A	Y	K	R	Y	I	T	G	V	L	V	A	D	L	Y	A	D	C	Q	Q	A	G	E
Query Conservation						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	M	E	T	M	E	A	T	L	P	I	L	H	D	T	V	Y	D	M	A	R	A	R	P	S	V	L	Y	K	K	E	S	V	Q	G	V	F	K	K	L	F	V	D	I	L	D	Q	L	E
Template Known Secondary structure		B								T	T												T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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