Job Description P0AD99 Confidence 91.08% Date Thu Jan 5 11:20:24 GMT 2012 Rank 7 Aligned Residues 350 % Identity 16% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		15	.	.	.	.	20	.	.	.	.	.	.																.	.	.	30	.	.	.	.	.	.	.	.	.	40												.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	M	T	F	A	L	F	V	G	A	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	F	P	P	M	V	G	L	Q	A	G	E	H	.	.	.	.	.	.	.	.	.	.	.	V	W	T	A	A	F	G	F	L	I	T	A	V	G	L	P	V	L	T	V	V	A	L	A	K	V	G	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	.	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E
Template Known Secondary structure										T					S																S		S	T	.	T			T	T																T	S																				T	S
Template Predicted Secondary structure																																			.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		69	70	.								.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.						.																																																															.	.
Query SS confidence					.	.	.	.	.	.	.						.																																																															.	.
Query Sequence		G	V	D	.	.	.	.	.	.	.	S	L	S	T	P	.	I	G	K	V	A	G	V	L	L	A	T	V	C	Y	L	A	V	G	P	L	F	A	T	P	R	T	A	T	V	S	F	E	V	G	I	A	P	L	T	G	D	S	A	L	P	L	F	I	Y	S	L	V	Y	F	A	I	V	I	L	V	S	L	.	.
Query Conservation					.	.	.	.	.	.	.						.																																																															.	.
Alig confidence					.	.	.	.	.	.	.						.																																																															.	.
Template Conservation
Template Sequence		V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V
Template Known Secondary structure				S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T				T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
							139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.													.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	Y	P	G	K	L	L	D	T	V	G	N	F	L	A	P	L	K	I	I	A	L	V	I	L	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	A	I	V	W	P	A	G	S	I	S	T	A	T	E	A	Y	Q	N	A	A	F	S	N	G	F	V	N	G	Y	L	T	M	D	T	L	G
Query Conservation		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y
Template Known Secondary structure		S	S				T	T																																																T					S	S								T											T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		A	M	V	F	G	I	V	I	V	N	A	A	R	S	R	G	V	T	E	A	R	L	L	T	R	Y	T	V	W	A	G	L	M	A	G	V	G	L	T	L	L	Y	L	A	L	F	R	L	G	S	D	S	.	.	.	.	.	A	S	L	V	D	Q	S	A	N	G	A	A	I	L	H	A	Y	V	Q	H	T	F	G
Query Conservation																																																						.	.	.	.	.
Alig confidence																	.	.	.																																			.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	.	.	.	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S
Template Known Secondary structure												T		S	S		.	.	.																																		T	T	S								G	G	G												T	S	S	S	T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.							.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.									.
Query SS confidence																																	.	.	.	.	.	.									.
Query Sequence		G	G	G	S	F	L	L	A	A	L	I	F	I	A	C	L	V	T	A	V	G	L	T	C	A	C	A	E	F	F	A	.	.	.	.	.	.	Q	Y	V	P	L	S	Y	R	.	T	L	V	F	I	L	G	G	F	S	M	V	V	S	N	L	G	L	S	Q	L	I	Q	I	S	V	P	V	L	T	A	I	Y	P
Query Conservation																																	.	.	.	.	.	.									.
Alig confidence																																	.	.	.	.	.	.									.
Template Conservation
Template Sequence		T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F
Template Known Secondary structure		T																												T	T	S		S	S	S	S	S		S	S		S	T	T																				S	S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	I	A	L	V	V	L	S	F	T	R	S	W	W	H	N	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K
Template Known Secondary structure																		T
Template Predicted Secondary structure
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions