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Job DescriptionP0AD99
Confidence91.05%DateThu Jan 5 11:20:24 GMT 2012
Rank8Aligned Residues292
% Identity9%Templatec2w8aC_
PDB info PDB header:membrane proteinChain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
Resolution3.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   75....80.........90......... 100.........110.........120.........130....... ..140........
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Query Sequence  TPIGKVAGVLLATVCYLAVGPLFAT. PRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVS. . . . . LYPGKLLDTVG
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Template Sequence  KGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIESDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNAN
Template Known Secondary structure  TT

SSSSTTTS




TTGGGTTS

S
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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   149150.........160... ......170.... .....180.........190.........200.........210...
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Query Sequence  NFLAPLKIIALVILS. . . . . VAAIVWPAGSI. . . . . . . . . . STATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA
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Template Sequence  XVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFFQXAGRTAXSADGTAGEWLGSWTIFYWAWWISWSPFVGXFLARIS
Template Known Secondary structure  S
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TTTTSS
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   214.....220.........230.........240........ .250.........260.........270.........280.........290..
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Query Sequence  RSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFR. LGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACL
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Template Sequence  RGR. . . SIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEEQLFGLLHALPGGQIXGIIAXILLGTFFI
Template Known Secondary structure  TT
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   390.. .......400.........410.........420.........430.........440.........450.........460......
 
   293......300.........310..... ....320.........330... ......340.........350.........360.....
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Query Sequence  VTAVGLTCACAEFFAQYVPLSYR. . . . TLVFILGGFSMVVSNLGL. . . SQLIQISVPVLTAIYPPCIALVVLSFTRSWWH
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Template Sequence  TSADSASTVXGTXSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATPFLFVVIGLXFALVKDLSN
Template Known Secondary structure  TTTT
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   467..470.........480.........490.........500.........510.........520.........530.........540......
 
   366...
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Query Sequence  NSSR
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Template Sequence  DVIY
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   547..550
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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