Job Description P0AD99 Confidence 99.86% Date Thu Jan 5 11:20:24 GMT 2012 Rank 2 Aligned Residues 422 % Identity 12% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		T	H	Q	L	R	S	R	D	I	I	A	L	G	F	M	T	F	A	L	F	V	G	A	G	N	I	I	F	P	P	M	V	G	L	Q	A	G	E	H	.	.	V	W	T	A	A	F	G	F	L	I	T	A	V	G	L	P	V	L	T	V	V	A	L	A	K	V	G	G	G	V	D	S	L	S	T	P	I	G	K
Query Conservation																																									.	.
Alig confidence																.	.	.																							.	.
Template Conservation																.	.	.
Template Sequence		E	R	S	V	G	P	F	S	L	A	A	I	W	F	.	.	.	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	I	N	F	T	V	A	A	R	M	P	F	G	I
Template Known Secondary structure		G			B											.	.	.					S	T										T	T	T	S																								T														T	T	T	T	S		T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	V	L	L	A	T	V	C	Y	L	A	V	G	P	L	F	A	T	P	R	T	A	T	V	S	F	E	V	G	I	A	P	L	T	G	D	S	A	L	P	L	F	I	Y	S	L	V	Y	F	A	I	V	I	L	V	S	L	Y	P	G	K	L	L	D	T	V	G	N	F	L	A	P	L	K	I	I	A	L
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	.	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G
Template Known Secondary structure		T	T	T																																					.																			T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	S	V	A	A	I	V	W	P	A	G	S	I	S	T	A	T	E	A	Y	Q	N	A	A	F	S	N	G	F	V	N	G	Y	L	T	M	D	T	L	G	A	M	V	F	G	I	V	I	V	N	A	A	R	S	R	G	V	T	E	A	R	L	L	T	R	Y	T	V	W	A	G	L	M	A	G	V	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G
Template Known Secondary structure													T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		T	L	L	Y	L	A	L	F	R	L	G	S	D	S	A	S	L	V	D	Q	S	A	N	G	A	A	I	L	H	A	Y	V	Q	H	T	F	G	G	G	G	S	F	L	L	A	A	L	I	F	I	A	C	L	V	T	A	V	G	L	T	C	A	C	A	E	F	F	A	Q	Y	V	P	.	.	L	S	Y	R	T	L
Query Conservation																																																																										.	.
Alig confidence																																																																										.	.
Template Conservation
Template Sequence		M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T	G
Template Known Secondary structure																					S		S											T																				T	T						T											S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.										.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																		.																														.	.	.	.	.	.	.	.	.
Query SS confidence																		.																														.	.	.	.	.	.	.	.	.
Query Sequence		V	F	I	L	G	G	F	S	M	V	V	S	N	L	G	L	.	S	Q	L	I	Q	I	S	V	P	V	L	T	A	I	Y	P	P	C	I	A	L	V	V	L	S	F	T	R	S	.	.	.	.	.	.	.	.	.	W	W	H	N	S	S	R	V	I	A	P	P	M	F	I	S	L	L	F	G	I	L	D	G	I
Query Conservation																		.																														.	.	.	.	.	.	.	.	.
Alig confidence																		.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L
Template Known Secondary structure												T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	A	F	S	D	I	L	P	S	W	A	Q	R	L	P	L	A	E	Q	G	L	A	W	L	M	P	T	V	V	M	V	V	L	A	I	I	W	D	R	A	A	G	R	Q	V	T	S	S	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	S	F	L	T	P	D	L	M	F	V	T	G	.	.	.	.	.	.	.	.	.	.	.	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E
Template Known Secondary structure						T		G	G	G						.	.	.	.	.	.	.	.	.	.	.																T	T	T	S		S			G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.												.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.